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MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities.
Cao L, Gurevich A, Alexander KL, Naman CB, Leão T, Glukhov E, Luzzatto-Knaan T, Vargas F, Quinn R, Bouslimani A, Nothias LF, Singh NK, Sanders JG, Benitez RAS, Thompson LR, Hamid MN, Morton JT, Mikheenko A, Shlemov A, Korobeynikov A, Friedberg I, Knight R, Venkateswaran K, Gerwick WH, Gerwick L, Dorrestein PC, Pevzner PA, Mohimani H. Cao L, et al. Among authors: mikheenko a. Cell Syst. 2019 Dec 18;9(6):600-608.e4. doi: 10.1016/j.cels.2019.09.004. Epub 2019 Oct 16. Cell Syst. 2019. PMID: 31629686 Free PMC article.
MetaQUAST: evaluation of metagenome assemblies.
Mikheenko A, Saveliev V, Gurevich A. Mikheenko A, et al. Bioinformatics. 2016 Apr 1;32(7):1088-90. doi: 10.1093/bioinformatics/btv697. Epub 2015 Nov 26. Bioinformatics. 2016. PMID: 26614127
Icarus: visualizer for de novo assembly evaluation.
Mikheenko A, Valin G, Prjibelski A, Saveliev V, Gurevich A. Mikheenko A, et al. Bioinformatics. 2016 Nov 1;32(21):3321-3323. doi: 10.1093/bioinformatics/btw379. Epub 2016 Jul 4. Bioinformatics. 2016. PMID: 27378299
Versatile genome assembly evaluation with QUAST-LG.
Mikheenko A, Prjibelski A, Saveliev V, Antipov D, Gurevich A. Mikheenko A, et al. Bioinformatics. 2018 Jul 1;34(13):i142-i150. doi: 10.1093/bioinformatics/bty266. Bioinformatics. 2018. PMID: 29949969 Free PMC article.
Dereplication of microbial metabolites through database search of mass spectra.
Mohimani H, Gurevich A, Shlemov A, Mikheenko A, Korobeynikov A, Cao L, Shcherbin E, Nothias LF, Dorrestein PC, Pevzner PA. Mohimani H, et al. Among authors: mikheenko a. Nat Commun. 2018 Oct 2;9(1):4035. doi: 10.1038/s41467-018-06082-8. Nat Commun. 2018. PMID: 30279420 Free PMC article.
25 results