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Data sharing in neuroimaging research.
Poline JB, Breeze JL, Ghosh S, Gorgolewski K, Halchenko YO, Hanke M, Haselgrove C, Helmer KG, Keator DB, Marcus DS, Poldrack RA, Schwartz Y, Ashburner J, Kennedy DN. Poline JB, et al. Among authors: hanke m. Front Neuroinform. 2012 Apr 5;6:9. doi: 10.3389/fninf.2012.00009. eCollection 2012. Front Neuroinform. 2012. PMID: 22493576 Free PMC article.
The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments.
Gorgolewski KJ, Auer T, Calhoun VD, Craddock RC, Das S, Duff EP, Flandin G, Ghosh SS, Glatard T, Halchenko YO, Handwerker DA, Hanke M, Keator D, Li X, Michael Z, Maumet C, Nichols BN, Nichols TE, Pellman J, Poline JB, Rokem A, Schaefer G, Sochat V, Triplett W, Turner JA, Varoquaux G, Poldrack RA. Gorgolewski KJ, et al. Among authors: hanke m. Sci Data. 2016 Jun 21;3:160044. doi: 10.1038/sdata.2016.44. Sci Data. 2016. PMID: 27326542 Free PMC article.
Best practices in data analysis and sharing in neuroimaging using MRI.
Nichols TE, Das S, Eickhoff SB, Evans AC, Glatard T, Hanke M, Kriegeskorte N, Milham MP, Poldrack RA, Poline JB, Proal E, Thirion B, Van Essen DC, White T, Yeo BT. Nichols TE, et al. Among authors: hanke m. Nat Neurosci. 2017 Feb 23;20(3):299-303. doi: 10.1038/nn.4500. Nat Neurosci. 2017. PMID: 28230846 Free PMC article. Review.
Toward standard practices for sharing computer code and programs in neuroscience.
Eglen SJ, Marwick B, Halchenko YO, Hanke M, Sufi S, Gleeson P, Silver RA, Davison AP, Lanyon L, Abrams M, Wachtler T, Willshaw DJ, Pouzat C, Poline JB. Eglen SJ, et al. Among authors: hanke m. Nat Neurosci. 2017 May 25;20(6):770-773. doi: 10.1038/nn.4550. Nat Neurosci. 2017. PMID: 28542156 Free PMC article.
Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging.
Kennedy DN, Abraham SA, Bates JF, Crowley A, Ghosh S, Gillespie T, Goncalves M, Grethe JS, Halchenko YO, Hanke M, Haselgrove C, Hodge SM, Jarecka D, Kaczmarzyk J, Keator DB, Meyer K, Martone ME, Padhy S, Poline JB, Preuss N, Sincomb T, Travers M. Kennedy DN, et al. Among authors: hanke m. Front Neuroinform. 2019 Feb 7;13:1. doi: 10.3389/fninf.2019.00001. eCollection 2019. Front Neuroinform. 2019. PMID: 30792636 Free PMC article.
PyBIDS: Python tools for BIDS datasets.
Yarkoni T, Markiewicz CJ, de la Vega A, Gorgolewski KJ, Salo T, Halchenko YO, McNamara Q, DeStasio K, Poline JB, Petrov D, Hayot-Sasson V, Nielson DM, Carlin J, Kiar G, Whitaker K, DuPre E, Wagner A, Tirrell LS, Jas M, Hanke M, Poldrack RA, Esteban O, Appelhoff S, Holdgraf C, Staden I, Thirion B, Kleinschmidt DF, Lee JA, Visconti di Oleggio Castello M, Notter MP, Blair R. Yarkoni T, et al. Among authors: hanke m. J Open Source Softw. 2019;4(40):1294. doi: 10.21105/joss.01294. Epub 2019 Aug 12. J Open Source Softw. 2019. PMID: 32775955 Free PMC article. No abstract available.
In defense of decentralized research data management.
Hanke M, Pestilli F, Wagner AS, Markiewicz CJ, Poline JB, Halchenko YO. Hanke M, et al. Neuroforum. 2021;27(1):17-25. doi: 10.1515/nf-2020-0037. Epub 2021 Jan 11. Neuroforum. 2021. PMID: 36504549 Free PMC article.
338 results