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Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation.
Sillitoe I, Andreeva A, Blundell TL, Buchan DWA, Finn RD, Gough J, Jones D, Kelley LA, Paysan-Lafosse T, Lam SD, Murzin AG, Pandurangan AP, Salazar GA, Skwark MJ, Sternberg MJE, Velankar S, Orengo C. Sillitoe I, et al. Among authors: orengo c. Nucleic Acids Res. 2020 Jan 8;48(D1):D314-D319. doi: 10.1093/nar/gkz967. Nucleic Acids Res. 2020. PMID: 31733063 Free PMC article.
A structural perspective on genome evolution.
Lee D, Grant A, Buchan D, Orengo C. Lee D, et al. Among authors: orengo c. Curr Opin Struct Biol. 2003 Jun;13(3):359-69. doi: 10.1016/s0959-440x(03)00079-4. Curr Opin Struct Biol. 2003. PMID: 12831888 Review.
Recognizing the fold of a protein structure.
Harrison A, Pearl F, Sillitoe I, Slidel T, Mott R, Thornton J, Orengo C. Harrison A, et al. Among authors: orengo c. Bioinformatics. 2003 Sep 22;19(14):1748-59. doi: 10.1093/bioinformatics/btg240. Bioinformatics. 2003. PMID: 14512345
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.
Pearl F, Todd A, Sillitoe I, Dibley M, Redfern O, Lewis T, Bennett C, Marsden R, Grant A, Lee D, Akpor A, Maibaum M, Harrison A, Dallman T, Reeves G, Diboun I, Addou S, Lise S, Johnston C, Sillero A, Thornton J, Orengo C. Pearl F, et al. Among authors: orengo c. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D247-51. doi: 10.1093/nar/gki024. Nucleic Acids Res. 2005. PMID: 15608188 Free PMC article.
Assessing strategies for improved superfamily recognition.
Sillitoe I, Dibley M, Bray J, Addou S, Orengo C. Sillitoe I, et al. Among authors: orengo c. Protein Sci. 2005 Jul;14(7):1800-10. doi: 10.1110/ps.041056105. Epub 2005 Jun 3. Protein Sci. 2005. PMID: 15937274 Free PMC article.
New developments in the InterPro database.
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Buillard V, Cerutti L, Copley R, Courcelle E, Das U, Daugherty L, Dibley M, Finn R, Fleischmann W, Gough J, Haft D, Hulo N, Hunter S, Kahn D, Kanapin A, Kejariwal A, Labarga A, Langendijk-Genevaux PS, Lonsdale D, Lopez R, Letunic I, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Nikolskaya AN, Orchard S, Orengo C, Petryszak R, Selengut JD, Sigrist CJ, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C. Mulder NJ, et al. Among authors: orengo c. Nucleic Acids Res. 2007 Jan;35(Database issue):D224-8. doi: 10.1093/nar/gkl841. Nucleic Acids Res. 2007. PMID: 17202162 Free PMC article.
Gene3D: comprehensive structural and functional annotation of genomes.
Yeats C, Lees J, Reid A, Kellam P, Martin N, Liu X, Orengo C. Yeats C, et al. Among authors: orengo c. Nucleic Acids Res. 2008 Jan;36(Database issue):D414-8. doi: 10.1093/nar/gkm1019. Epub 2007 Nov 21. Nucleic Acids Res. 2008. PMID: 18032434 Free PMC article.
Predicting protein function from sequence and structure.
Lee D, Redfern O, Orengo C. Lee D, et al. Among authors: orengo c. Nat Rev Mol Cell Biol. 2007 Dec;8(12):995-1005. doi: 10.1038/nrm2281. Nat Rev Mol Cell Biol. 2007. PMID: 18037900 Review.
300 results