Tibshirani R - Search Results

1

Mapping lung cancer epithelial-mesenchymal transition states and trajectories with single-cell resolution.

Karacosta LG, Anchang B, Ignatiadis N, Kimmey SC, Benson JA, Shrager JB, Tibshirani R, Bendall SC, Plevritis SK. Karacosta LG, et al. Among authors: tibshirani r. Nat Commun. 2019 Dec 6;10(1):5587. doi: 10.1038/s41467-019-13441-6. Nat Commun. 2019. PMID: 31811131 Free PMC article.

2

Extracting binary signals from microarray time-course data.

Sahoo D, Dill DL, Tibshirani R, Plevritis SK. Sahoo D, et al. Among authors: tibshirani r. Nucleic Acids Res. 2007;35(11):3705-12. doi: 10.1093/nar/gkm284. Epub 2007 May 21. Nucleic Acids Res. 2007. PMID: 17517782 Free PMC article.

3

Boolean implication networks derived from large scale, whole genome microarray datasets.

Sahoo D, Dill DL, Gentles AJ, Tibshirani R, Plevritis SK. Sahoo D, et al. Among authors: tibshirani r. Genome Biol. 2008 Oct 30;9(10):R157. doi: 10.1186/gb-2008-9-10-r157. Genome Biol. 2008. PMID: 18973690 Free PMC article.

4

Prediction of survival in diffuse large B-cell lymphoma based on the expression of 2 genes reflecting tumor and microenvironment.

Alizadeh AA, Gentles AJ, Alencar AJ, Liu CL, Kohrt HE, Houot R, Goldstein MJ, Zhao S, Natkunam Y, Advani RH, Gascoyne RD, Briones J, Tibshirani RJ, Myklebust JH, Plevritis SK, Lossos IS, Levy R. Alizadeh AA, et al. Among authors: tibshirani rj. Blood. 2011 Aug 4;118(5):1350-8. doi: 10.1182/blood-2011-03-345272. Epub 2011 Jun 13. Blood. 2011. PMID: 21670469 Free PMC article.

5

Bayesian gene set analysis for identifying significant biological pathways.

Shahbaba B, Tibshirani R, Shachaf CM, Plevritis SK. Shahbaba B, et al. Among authors: tibshirani r. J R Stat Soc Ser C Appl Stat. 2011 Aug 1;60(4):541-557. doi: 10.1111/j.1467-9876.2011.00765.x. J R Stat Soc Ser C Appl Stat. 2011. PMID: 21857748 Free PMC article.

6

Pancancer analysis of DNA methylation-driven genes using MethylMix.

Gevaert O, Tibshirani R, Plevritis SK. Gevaert O, et al. Among authors: tibshirani r. Genome Biol. 2015 Jan 29;16(1):17. doi: 10.1186/s13059-014-0579-8. Genome Biol. 2015. PMID: 25631659 Free PMC article.

7

Molecular subtyping for clinically defined breast cancer subgroups.

Zhao X, Rødland EA, Tibshirani R, Plevritis S. Zhao X, et al. Among authors: tibshirani r. Breast Cancer Res. 2015 Feb 26;17(1):29. doi: 10.1186/s13058-015-0520-4. Breast Cancer Res. 2015. PMID: 25849221 Free PMC article.

8

Single-cell developmental classification of B cell precursor acute lymphoblastic leukemia at diagnosis reveals predictors of relapse.

Good Z, Sarno J, Jager A, Samusik N, Aghaeepour N, Simonds EF, White L, Lacayo NJ, Fantl WJ, Fazio G, Gaipa G, Biondi A, Tibshirani R, Bendall SC, Nolan GP, Davis KL. Good Z, et al. Among authors: tibshirani r. Nat Med. 2018 May;24(4):474-483. doi: 10.1038/nm.4505. Epub 2018 Mar 5. Nat Med. 2018. PMID: 29505032 Free PMC article.

9

DRUG-NEM: Optimizing drug combinations using single-cell perturbation response to account for intratumoral heterogeneity.

Anchang B, Davis KL, Fienberg HG, Williamson BD, Bendall SC, Karacosta LG, Tibshirani R, Nolan GP, Plevritis SK. Anchang B, et al. Among authors: tibshirani r. Proc Natl Acad Sci U S A. 2018 May 1;115(18):E4294-E4303. doi: 10.1073/pnas.1711365115. Epub 2018 Apr 13. Proc Natl Acad Sci U S A. 2018. PMID: 29654148 Free PMC article.

10

Proliferation tracing with single-cell mass cytometry optimizes generation of stem cell memory-like T cells.

Good Z, Borges L, Vivanco Gonzalez N, Sahaf B, Samusik N, Tibshirani R, Nolan GP, Bendall SC. Good Z, et al. Among authors: tibshirani r. Nat Biotechnol. 2019 Mar;37(3):259-266. doi: 10.1038/s41587-019-0033-2. Epub 2019 Feb 11. Nat Biotechnol. 2019. PMID: 30742126 Free PMC article.

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