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Toward a gold standard for benchmarking gene set enrichment analysis.
Geistlinger L, Csaba G, Santarelli M, Ramos M, Schiffer L, Turaga N, Law C, Davis S, Carey V, Morgan M, Zimmer R, Waldron L. Geistlinger L, et al. Among authors: zimmer r. Brief Bioinform. 2021 Jan 18;22(1):545-556. doi: 10.1093/bib/bbz158. Brief Bioinform. 2021. PMID: 32026945 Free PMC article.
Alternative splicing and protein structure evolution.
Birzele F, Csaba G, Zimmer R. Birzele F, et al. Among authors: zimmer r. Nucleic Acids Res. 2008 Feb;36(2):550-8. doi: 10.1093/nar/gkm1054. Epub 2007 Nov 30. Nucleic Acids Res. 2008. PMID: 18055499 Free PMC article.
From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems.
Geistlinger L, Csaba G, Küffner R, Mulder N, Zimmer R. Geistlinger L, et al. Among authors: zimmer r. Bioinformatics. 2011 Jul 1;27(13):i366-73. doi: 10.1093/bioinformatics/btr228. Bioinformatics. 2011. PMID: 21685094 Free PMC article.
AVAILABILITY: The method and accompanying visualization capabilities have been bundled into an R package and tied to a grahical user interface, the Galaxy workflow environment, that is running as a web server. CONTACT: Ludwig.Geistlinger@bio.ifi.lmu.de; Ralf.Zimmer@ …
AVAILABILITY: The method and accompanying visualization capabilities have been bundled into an R package and tied to a grahical user …
Rigorous assessment of gene set enrichment tests.
Naeem H, Zimmer R, Tavakkolkhah P, Küffner R. Naeem H, et al. Among authors: zimmer r. Bioinformatics. 2012 Jun 1;28(11):1480-6. doi: 10.1093/bioinformatics/bts164. Epub 2012 Apr 5. Bioinformatics. 2012. PMID: 22492315
470 results