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De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences.
Vakirlis N, Acar O, Hsu B, Castilho Coelho N, Van Oss SB, Wacholder A, Medetgul-Ernar K, Bowman RW 2nd, Hines CP, Iannotta J, Parikh SB, McLysaght A, Camacho CJ, O'Donnell AF, Ideker T, Carvunis AR. Vakirlis N, et al. Among authors: medetgul ernar k. Nat Commun. 2020 Feb 7;11(1):781. doi: 10.1038/s41467-020-14500-z. Nat Commun. 2020. PMID: 32034123 Free PMC article.
Author Correction: De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences.
Vakirlis N, Acar O, Hsu B, Coelho NC, Van Oss SB, Wacholder A, Medetgul-Ernar K, Bowman RW 2nd, Hines CP, Iannotta J, Parikh SB, McLysaght A, Camacho CJ, O'Donnell AF, Ideker T, Carvunis AR. Vakirlis N, et al. Among authors: medetgul ernar k. Nat Commun. 2021 Jan 4;12(1):200. doi: 10.1038/s41467-020-20609-y. Nat Commun. 2021. PMID: 33398071 Free PMC article. No abstract available.
Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers.
Ando M, Saito Y, Xu G, Bui NQ, Medetgul-Ernar K, Pu M, Fisch K, Ren S, Sakai A, Fukusumi T, Liu C, Haft S, Pang J, Mark A, Gaykalova DA, Guo T, Favorov AV, Yegnasubramanian S, Fertig EJ, Ha P, Tamayo P, Yamasoba T, Ideker T, Messer K, Califano JA. Ando M, et al. Among authors: medetgul ernar k. Nat Commun. 2019 May 16;10(1):2188. doi: 10.1038/s41467-019-09937-w. Nat Commun. 2019. PMID: 31097695 Free PMC article.
Publisher Correction: Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers.
Ando M, Saito Y, Xu G, Bui NQ, Medetgul-Ernar K, Pu M, Fisch K, Ren S, Sakai A, Fukusumi T, Liu C, Haft S, Pang J, Mark A, Gaykalova DA, Guo T, Favorov AV, Yegnasubramanian S, Fertig EJ, Ha P, Tamayo P, Yamasoba T, Ideker T, Messer K, Califano JA. Ando M, et al. Among authors: medetgul ernar k. Nat Commun. 2019 May 29;10(1):2415. doi: 10.1038/s41467-019-10557-7. Nat Commun. 2019. PMID: 31142745 Free PMC article.
Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States.
Kim JW, Abudayyeh OO, Yeerna H, Yeang CH, Stewart M, Jenkins RW, Kitajima S, Konieczkowski DJ, Medetgul-Ernar K, Cavazos T, Mah C, Ting S, Van Allen EM, Cohen O, Mcdermott J, Damato E, Aguirre AJ, Liang J, Liberzon A, Alexe G, Doench J, Ghandi M, Vazquez F, Weir BA, Tsherniak A, Subramanian A, Meneses-Cime K, Park J, Clemons P, Garraway LA, Thomas D, Boehm JS, Barbie DA, Hahn WC, Mesirov JP, Tamayo P. Kim JW, et al. Among authors: medetgul ernar k. Cell Syst. 2017 Aug 23;5(2):105-118.e9. doi: 10.1016/j.cels.2017.08.002. Cell Syst. 2017. PMID: 28837809 Free PMC article.
YAP-Driven Malignant Reprogramming of Epithelial Stem Cells at Single Cell Resolution.
Gutkind JS, Faraji F, Ramirez S, Clubb L, Sato K, Quiroz PA, Galloway W, Mikulski Z, Hoang T, Medetgul-Ernar K, Marangoni P, Jones K, Officer A, Molinolo A, Kim K, Sakaguchi K, Califano J, Smith Q, Klein O, Tamayo P. Gutkind JS, et al. Among authors: medetgul ernar k. Res Sq [Preprint]. 2023 Oct 27:rs.3.rs-3426301. doi: 10.21203/rs.3.rs-3426301/v1. Res Sq. 2023. PMID: 37961717 Free PMC article. Preprint.
Direct reprogramming of oral epithelial progenitor cells to cancer stem cells at single cell resolution in vivo.
Faraji F, Ramirez SI, Clubb LM, Sato K, Quiroz PYA, Galloway WMG, Mikulski Z, Hoang TS, Medetgul-Ernar K, Marangoni P, Jones KB, Officer A, Molinolo AA, Kim K, Sakaguchi K, Califano JA, Smith Q, Klein OD, Tamayo P, Gutkind JS. Faraji F, et al. Among authors: medetgul ernar k. bioRxiv [Preprint]. 2023 Jul 26:2023.07.24.550427. doi: 10.1101/2023.07.24.550427. bioRxiv. 2023. PMID: 37546810 Free PMC article. Preprint.
Standing on the shoulders of mice.
Medetgul-Ernar K, Davis MM. Medetgul-Ernar K, et al. Immunity. 2022 Aug 9;55(8):1343-1353. doi: 10.1016/j.immuni.2022.07.008. Immunity. 2022. PMID: 35947979 Free PMC article. Review.