Shank SD - Search Results

1

Characterizing lineage-specific evolution and the processes driving genomic diversification in chordates.

Northover DE, Shank SD, Liberles DA. Northover DE, et al. Among authors: shank sd. BMC Evol Biol. 2020 Feb 11;20(1):24. doi: 10.1186/s12862-020-1585-y. BMC Evol Biol. 2020. PMID: 32046633 Free PMC article.

2

The Adaptive Evolution Database (TAED): A New Release of a Database of Phylogenetically Indexed Gene Families from Chordates.

Hermansen RA, Oswald BP, Knight S, Shank SD, Northover D, Korunes KL, Michel SN, Liberles DA. Hermansen RA, et al. Among authors: shank sd. J Mol Evol. 2017 Aug;85(1-2):46-56. doi: 10.1007/s00239-017-9806-8. Epub 2017 Aug 9. J Mol Evol. 2017. PMID: 28795237

3

Evolution of Viral Genomes: Interplay Between Selection, Recombination, and Other Forces.

Spielman SJ, Weaver S, Shank SD, Magalis BR, Li M, Kosakovsky Pond SL. Spielman SJ, et al. Among authors: shank sd. Methods Mol Biol. 2019;1910:427-468. doi: 10.1007/978-1-4939-9074-0_14. Methods Mol Biol. 2019. PMID: 31278673

4

Synonymous Site-to-Site Substitution Rate Variation Dramatically Inflates False Positive Rates of Selection Analyses: Ignore at Your Own Peril.

Wisotsky SR, Kosakovsky Pond SL, Shank SD, Muse SV. Wisotsky SR, et al. Among authors: shank sd. Mol Biol Evol. 2020 Aug 1;37(8):2430-2439. doi: 10.1093/molbev/msaa037. Mol Biol Evol. 2020. PMID: 32068869 Free PMC article.

5

Extra base hits: Widespread empirical support for instantaneous multiple-nucleotide changes.

Lucaci AG, Wisotsky SR, Shank SD, Weaver S, Kosakovsky Pond SL. Lucaci AG, et al. Among authors: shank sd. PLoS One. 2021 Mar 12;16(3):e0248337. doi: 10.1371/journal.pone.0248337. eCollection 2021. PLoS One. 2021. PMID: 33711070 Free PMC article.

6

The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages.

Martin DP, Weaver S, Tegally H, San JE, Shank SD, Wilkinson E, Lucaci AG, Giandhari J, Naidoo S, Pillay Y, Singh L, Lessells RJ; NGS-SA; COVID-19 Genomics UK (COG-UK); Gupta RK, Wertheim JO, Nekturenko A, Murrell B, Harkins GW, Lemey P, MacLean OA, Robertson DL, de Oliveira T, Kosakovsky Pond SL. Martin DP, et al. Among authors: shank sd. Cell. 2021 Sep 30;184(20):5189-5200.e7. doi: 10.1016/j.cell.2021.09.003. Epub 2021 Sep 7. Cell. 2021. PMID: 34537136 Free PMC article.

7

RASCL: Rapid Assessment of Selection in CLades through molecular sequence analysis.

Lucaci AG, Zehr JD, Shank SD, Bouvier D, Ostrovsky A, Mei H, Nekrutenko A, Martin DP, Kosakovsky Pond SL. Lucaci AG, et al. Among authors: shank sd. PLoS One. 2022 Nov 2;17(11):e0275623. doi: 10.1371/journal.pone.0275623. eCollection 2022. PLoS One. 2022. PMID: 36322581 Free PMC article.

8

Datamonkey 2.0: A Modern Web Application for Characterizing Selective and Other Evolutionary Processes.

Weaver S, Shank SD, Spielman SJ, Li M, Muse SV, Kosakovsky Pond SL. Weaver S, et al. Among authors: shank sd. Mol Biol Evol. 2018 Mar 1;35(3):773-777. doi: 10.1093/molbev/msx335. Mol Biol Evol. 2018. PMID: 29301006 Free PMC article.

9

phylotree.js - a JavaScript library for application development and interactive data visualization in phylogenetics.

Shank SD, Weaver S, Kosakovsky Pond SL. Shank SD, et al. BMC Bioinformatics. 2018 Jul 25;19(1):276. doi: 10.1186/s12859-018-2283-2. BMC Bioinformatics. 2018. PMID: 30045713 Free PMC article.

10

HyPhy 2.5-A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies.

Kosakovsky Pond SL, Poon AFY, Velazquez R, Weaver S, Hepler NL, Murrell B, Shank SD, Magalis BR, Bouvier D, Nekrutenko A, Wisotsky S, Spielman SJ, Frost SDW, Muse SV. Kosakovsky Pond SL, et al. Among authors: shank sd. Mol Biol Evol. 2020 Jan 1;37(1):295-299. doi: 10.1093/molbev/msz197. Mol Biol Evol. 2020. PMID: 31504749 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

19 results

Search Page