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Computational approaches for interpreting scRNA-seq data.
Rostom R, Svensson V, Teichmann SA, Kar G. Rostom R, et al. FEBS Lett. 2017 Aug;591(15):2213-2225. doi: 10.1002/1873-3468.12684. Epub 2017 Jun 12. FEBS Lett. 2017. PMID: 28524227 Free PMC article. Review.
Gene expression variability across cells and species shapes innate immunity.
Hagai T, Chen X, Miragaia RJ, Rostom R, Gomes T, Kunowska N, Henriksson J, Park JE, Proserpio V, Donati G, Bossini-Castillo L, Vieira Braga FA, Naamati G, Fletcher J, Stephenson E, Vegh P, Trynka G, Kondova I, Dennis M, Haniffa M, Nourmohammad A, Lässig M, Teichmann SA. Hagai T, et al. Among authors: rostom r. Nature. 2018 Nov;563(7730):197-202. doi: 10.1038/s41586-018-0657-2. Epub 2018 Oct 24. Nature. 2018. PMID: 30356220 Free PMC article.
Mapping interindividual dynamics of innate immune response at single-cell resolution.
Kumasaka N, Rostom R, Huang N, Polanski K, Meyer KB, Patel S, Boyd R, Gomez C, Barnett SN, Panousis NI, Schwartzentruber J, Ghoussaini M, Lyons PA, Calero-Nieto FJ, Göttgens B, Barnes JL, Worlock KB, Yoshida M, Nikolić MZ, Stephenson E, Reynolds G, Haniffa M, Marioni JC, Stegle O, Hagai T, Teichmann SA. Kumasaka N, et al. Among authors: rostom r. Nat Genet. 2023 Jun;55(6):1066-1075. doi: 10.1038/s41588-023-01421-y. Epub 2023 Jun 12. Nat Genet. 2023. PMID: 37308670 Free PMC article.
Mapping small molecule binding data to structural domains.
Kruger FA, Rostom R, Overington JP. Kruger FA, et al. Among authors: rostom r. BMC Bioinformatics. 2012;13 Suppl 17(Suppl 17):S11. doi: 10.1186/1471-2105-13-S17-S11. Epub 2012 Dec 13. BMC Bioinformatics. 2012. PMID: 23282026 Free PMC article.