Zhang K - Search Results

1

Tools for the analysis of high-dimensional single-cell RNA sequencing data.

Wu Y, Zhang K. Wu Y, et al. Among authors: zhang k. Nat Rev Nephrol. 2020 Jul;16(7):408-421. doi: 10.1038/s41581-020-0262-0. Epub 2020 Mar 27. Nat Rev Nephrol. 2020. PMID: 32221477 Review.

2

Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human.

Zhang K, Li JB, Gao Y, Egli D, Xie B, Deng J, Li Z, Lee JH, Aach J, Leproust EM, Eggan K, Church GM. Zhang K, et al. Nat Methods. 2009 Aug;6(8):613-8. doi: 10.1038/nmeth.1357. Epub 2009 Jul 20. Nat Methods. 2009. PMID: 19620972 Free PMC article.

3

Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells.

Gole J, Gore A, Richards A, Chiu YJ, Fung HL, Bushman D, Chiang HI, Chun J, Lo YH, Zhang K. Gole J, et al. Among authors: zhang k. Nat Biotechnol. 2013 Dec;31(12):1126-32. doi: 10.1038/nbt.2720. Epub 2013 Nov 10. Nat Biotechnol. 2013. PMID: 24213699 Free PMC article.

4

Advances in the profiling of DNA modifications: cytosine methylation and beyond.

Plongthongkum N, Diep DH, Zhang K. Plongthongkum N, et al. Among authors: zhang k. Nat Rev Genet. 2014 Oct;15(10):647-61. doi: 10.1038/nrg3772. Epub 2014 Aug 27. Nat Rev Genet. 2014. PMID: 25159599 Review.

5

Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues.

Lee JH, Daugharthy ER, Scheiman J, Kalhor R, Ferrante TC, Terry R, Turczyk BM, Yang JL, Lee HS, Aach J, Zhang K, Church GM. Lee JH, et al. Among authors: zhang k. Nat Protoc. 2015 Mar;10(3):442-58. doi: 10.1038/nprot.2014.191. Epub 2015 Feb 12. Nat Protoc. 2015. PMID: 25675209 Free PMC article.

6

Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis.

Fan J, Salathia N, Liu R, Kaeser GE, Yung YC, Herman JL, Kaper F, Fan JB, Zhang K, Chun J, Kharchenko PV. Fan J, et al. Among authors: zhang k. Nat Methods. 2016 Mar;13(3):241-4. doi: 10.1038/nmeth.3734. Epub 2016 Jan 18. Nat Methods. 2016. PMID: 26780092 Free PMC article.

7

Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain.

Lake BB, Ai R, Kaeser GE, Salathia NS, Yung YC, Liu R, Wildberg A, Gao D, Fung HL, Chen S, Vijayaraghavan R, Wong J, Chen A, Sheng X, Kaper F, Shen R, Ronaghi M, Fan JB, Wang W, Chun J, Zhang K. Lake BB, et al. Among authors: zhang k. Science. 2016 Jun 24;352(6293):1586-90. doi: 10.1126/science.aaf1204. Science. 2016. PMID: 27339989 Free PMC article.

8

Assessing characteristics of RNA amplification methods for single cell RNA sequencing.

Dueck HR, Ai R, Camarena A, Ding B, Dominguez R, Evgrafov OV, Fan JB, Fisher SA, Herstein JS, Kim TK, Kim JM, Lin MY, Liu R, Mack WJ, McGroty S, Nguyen JD, Salathia N, Shallcross J, Souaiaia T, Spaethling JM, Walker CP, Wang J, Wang K, Wang W, Wildberg A, Zheng L, Chow RH, Eberwine J, Knowles JA, Zhang K, Kim J. Dueck HR, et al. Among authors: zhang k. BMC Genomics. 2016 Nov 24;17(1):966. doi: 10.1186/s12864-016-3300-3. BMC Genomics. 2016. PMID: 27881084 Free PMC article.

9

Stratifying tissue heterogeneity with scalable single-cell assays.

Zhang K. Zhang K. Nat Methods. 2017 Feb 28;14(3):238-239. doi: 10.1038/nmeth.4209. Nat Methods. 2017. PMID: 28245217 No abstract available.

10

Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tumor tissue-of-origin mapping from plasma DNA.

Guo S, Diep D, Plongthongkum N, Fung HL, Zhang K, Zhang K. Guo S, et al. Among authors: zhang k. Nat Genet. 2017 Apr;49(4):635-642. doi: 10.1038/ng.3805. Epub 2017 Mar 6. Nat Genet. 2017. PMID: 28263317 Free PMC article.

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