Bushman FD - Search Results

1

Bacterial colonization reprograms the neonatal gut metabolome.

Bittinger K, Zhao C, Li Y, Ford E, Friedman ES, Ni J, Kulkarni CV, Cai J, Tian Y, Liu Q, Patterson AD, Sarkar D, Chan SHJ, Maranas C, Saha-Shah A, Lund P, Garcia BA, Mattei LM, Gerber JS, Elovitz MA, Kelly A, DeRusso P, Kim D, Hofstaedter CE, Goulian M, Li H, Bushman FD, Zemel BS, Wu GD. Bittinger K, et al. Among authors: bushman fd. Nat Microbiol. 2020 Jun;5(6):838-847. doi: 10.1038/s41564-020-0694-0. Epub 2020 Apr 13. Nat Microbiol. 2020. PMID: 32284564 Free PMC article.

2

High-fat diet determines the composition of the murine gut microbiome independently of obesity.

Hildebrandt MA, Hoffmann C, Sherrill-Mix SA, Keilbaugh SA, Hamady M, Chen YY, Knight R, Ahima RS, Bushman F, Wu GD. Hildebrandt MA, et al. Gastroenterology. 2009 Nov;137(5):1716-24.e1-2. doi: 10.1053/j.gastro.2009.08.042. Epub 2009 Aug 23. Gastroenterology. 2009. PMID: 19706296 Free PMC article.

3

Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags.

Wu GD, Lewis JD, Hoffmann C, Chen YY, Knight R, Bittinger K, Hwang J, Chen J, Berkowsky R, Nessel L, Li H, Bushman FD. Wu GD, et al. Among authors: bushman fd. BMC Microbiol. 2010 Jul 30;10:206. doi: 10.1186/1471-2180-10-206. BMC Microbiol. 2010. PMID: 20673359 Free PMC article.

4

Disordered microbial communities in the upper respiratory tract of cigarette smokers.

Charlson ES, Chen J, Custers-Allen R, Bittinger K, Li H, Sinha R, Hwang J, Bushman FD, Collman RG. Charlson ES, et al. Among authors: bushman fd. PLoS One. 2010 Dec 20;5(12):e15216. doi: 10.1371/journal.pone.0015216. PLoS One. 2010. PMID: 21188149 Free PMC article.

5

Topographical continuity of bacterial populations in the healthy human respiratory tract.

Charlson ES, Bittinger K, Haas AR, Fitzgerald AS, Frank I, Yadav A, Bushman FD, Collman RG. Charlson ES, et al. Among authors: bushman fd. Am J Respir Crit Care Med. 2011 Oct 15;184(8):957-63. doi: 10.1164/rccm.201104-0655OC. Epub 2011 Jun 16. Am J Respir Crit Care Med. 2011. PMID: 21680950 Free PMC article.

6

Switching between raltegravir resistance pathways analyzed by deep sequencing.

Mukherjee R, Jensen ST, Male F, Bittinger K, Hodinka RL, Miller MD, Bushman FD. Mukherjee R, et al. Among authors: bushman fd. AIDS. 2011 Oct 23;25(16):1951-9. doi: 10.1097/QAD.0b013e32834b34de. AIDS. 2011. PMID: 21832937 Free PMC article.

7

The human gut virome: inter-individual variation and dynamic response to diet.

Minot S, Sinha R, Chen J, Li H, Keilbaugh SA, Wu GD, Lewis JD, Bushman FD. Minot S, et al. Among authors: bushman fd. Genome Res. 2011 Oct;21(10):1616-25. doi: 10.1101/gr.122705.111. Epub 2011 Aug 31. Genome Res. 2011. PMID: 21880779 Free PMC article.

8

Linking long-term dietary patterns with gut microbial enterotypes.

Wu GD, Chen J, Hoffmann C, Bittinger K, Chen YY, Keilbaugh SA, Bewtra M, Knights D, Walters WA, Knight R, Sinha R, Gilroy E, Gupta K, Baldassano R, Nessel L, Li H, Bushman FD, Lewis JD. Wu GD, et al. Among authors: bushman fd. Science. 2011 Oct 7;334(6052):105-8. doi: 10.1126/science.1208344. Epub 2011 Sep 1. Science. 2011. PMID: 21885731 Free PMC article. Clinical Trial.

9

Hypervariable loci in the human gut virome.

Minot S, Grunberg S, Wu GD, Lewis JD, Bushman FD. Minot S, et al. Among authors: bushman fd. Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):3962-6. doi: 10.1073/pnas.1119061109. Epub 2012 Feb 21. Proc Natl Acad Sci U S A. 2012. PMID: 22355105 Free PMC article.

10

Associating microbiome composition with environmental covariates using generalized UniFrac distances.

Chen J, Bittinger K, Charlson ES, Hoffmann C, Lewis J, Wu GD, Collman RG, Bushman FD, Li H. Chen J, et al. Among authors: bushman fd. Bioinformatics. 2012 Aug 15;28(16):2106-13. doi: 10.1093/bioinformatics/bts342. Epub 2012 Jun 17. Bioinformatics. 2012. PMID: 22711789 Free PMC article.

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