Kaplan T - Search Results

1

Disease-associated astrocytes in Alzheimer's disease and aging.

Habib N, McCabe C, Medina S, Varshavsky M, Kitsberg D, Dvir-Szternfeld R, Green G, Dionne D, Nguyen L, Marshall JL, Chen F, Zhang F, Kaplan T, Regev A, Schwartz M. Habib N, et al. Among authors: kaplan t. Nat Neurosci. 2020 Jun;23(6):701-706. doi: 10.1038/s41593-020-0624-8. Epub 2020 Apr 27. Nat Neurosci. 2020. PMID: 32341542 Free PMC article.

2

A novel Bayesian DNA motif comparison method for clustering and retrieval.

Habib N, Kaplan T, Margalit H, Friedman N. Habib N, et al. Among authors: kaplan t. PLoS Comput Biol. 2008 Feb 29;4(2):e1000010. doi: 10.1371/journal.pcbi.1000010. PLoS Comput Biol. 2008. PMID: 18463706 Free PMC article.

3

Structure and function of a transcriptional network activated by the MAPK Hog1.

Capaldi AP, Kaplan T, Liu Y, Habib N, Regev A, Friedman N, O'Shea EK. Capaldi AP, et al. Among authors: kaplan t. Nat Genet. 2008 Nov;40(11):1300-6. doi: 10.1038/ng.235. Epub 2008 Oct 19. Nat Genet. 2008. PMID: 18931682 Free PMC article.

4

Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing.

Yassour M, Kaplan T, Fraser HB, Levin JZ, Pfiffner J, Adiconis X, Schroth G, Luo S, Khrebtukova I, Gnirke A, Nusbaum C, Thompson DA, Friedman N, Regev A. Yassour M, et al. Among authors: kaplan t. Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3264-9. doi: 10.1073/pnas.0812841106. Epub 2009 Feb 10. Proc Natl Acad Sci U S A. 2009. PMID: 19208812 Free PMC article.

5

Genomic retargeting of p53 and CTCF is associated with transcriptional changes during oncogenic HRas-induced transformation.

Schwartz M, Portugez AS, Attia BZ, Tannenbaum M, Cohen L, Loza O, Chase E, Turman Y, Kaplan T, Salah Z, Hakim O. Schwartz M, et al. Among authors: kaplan t. Commun Biol. 2020 Nov 25;3(1):696. doi: 10.1038/s42003-020-01398-y. Commun Biol. 2020. PMID: 33239721 Free PMC article.

6

Comparative analysis of T4 DNA ligases and DNA polymerases used in chromosome conformation capture assays.

Schwartz M, Sarusi A, Deitch RT, Tal M, Raz D, Sung MH, Kaplan T, Hakim O. Schwartz M, et al. Among authors: kaplan t. Biotechniques. 2015 Apr 1;58(4):195-9. doi: 10.2144/000114276. eCollection 2015 Apr. Biotechniques. 2015. PMID: 25861932 Free article.

7

Hierarchical role for transcription factors and chromatin structure in genome organization along adipogenesis.

Sarusi Portuguez A, Schwartz M, Siersbaek R, Nielsen R, Sung MH, Mandrup S, Kaplan T, Hakim O. Sarusi Portuguez A, et al. Among authors: kaplan t. FEBS J. 2017 Oct;284(19):3230-3244. doi: 10.1111/febs.14183. Epub 2017 Aug 16. FEBS J. 2017. PMID: 28755519 Free PMC article.

8

A DNA methylation atlas of normal human cell types.

Loyfer N, Magenheim J, Peretz A, Cann G, Bredno J, Klochendler A, Fox-Fisher I, Shabi-Porat S, Hecht M, Pelet T, Moss J, Drawshy Z, Amini H, Moradi P, Nagaraju S, Bauman D, Shveiky D, Porat S, Dior U, Rivkin G, Or O, Hirshoren N, Carmon E, Pikarsky A, Khalaileh A, Zamir G, Grinbaum R, Abu Gazala M, Mizrahi I, Shussman N, Korach A, Wald O, Izhar U, Erez E, Yutkin V, Samet Y, Rotnemer Golinkin D, Spalding KL, Druid H, Arner P, Shapiro AMJ, Grompe M, Aravanis A, Venn O, Jamshidi A, Shemer R, Dor Y, Glaser B, Kaplan T. Loyfer N, et al. Among authors: kaplan t. Nature. 2023 Jan;613(7943):355-364. doi: 10.1038/s41586-022-05580-6. Epub 2023 Jan 4. Nature. 2023. PMID: 36599988 Free PMC article.

9

Accurate age prediction from blood using a small set of DNA methylation sites and a cohort-based machine learning algorithm.

Varshavsky M, Harari G, Glaser B, Dor Y, Shemer R, Kaplan T. Varshavsky M, et al. Among authors: kaplan t. Cell Rep Methods. 2023 Sep 25;3(9):100567. doi: 10.1016/j.crmeth.2023.100567. Epub 2023 Aug 28. Cell Rep Methods. 2023. PMID: 37751697 Free PMC article.

10

Promoter-enhancer interactions identified from Hi-C data using probabilistic models and hierarchical topological domains.

Ron G, Globerson Y, Moran D, Kaplan T. Ron G, et al. Among authors: kaplan t. Nat Commun. 2017 Dec 21;8(1):2237. doi: 10.1038/s41467-017-02386-3. Nat Commun. 2017. PMID: 29269730 Free PMC article.

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