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Harmonization of quality metrics and power calculation in multi-omic studies.
Tarazona S, Balzano-Nogueira L, Gómez-Cabrero D, Schmidt A, Imhof A, Hankemeier T, Tegnér J, Westerhuis JA, Conesa A. Tarazona S, et al. Among authors: westerhuis ja. Nat Commun. 2020 Jun 18;11(1):3092. doi: 10.1038/s41467-020-16937-8. Nat Commun. 2020. PMID: 32555183 Free PMC article.
Separating common from distinctive variation.
van der Kloet FM, Sebastián-León P, Conesa A, Smilde AK, Westerhuis JA. van der Kloet FM, et al. Among authors: westerhuis ja. BMC Bioinformatics. 2016 Jun 6;17 Suppl 5(Suppl 5):195. doi: 10.1186/s12859-016-1037-2. BMC Bioinformatics. 2016. PMID: 27294690 Free PMC article.
Fusing metabolomics data sets with heterogeneous measurement errors.
Waaijenborg S, Korobko O, Willems van Dijk K, Lips M, Hankemeier T, Wilderjans TF, Smilde AK, Westerhuis JA. Waaijenborg S, et al. Among authors: westerhuis ja. PLoS One. 2018 Apr 26;13(4):e0195939. doi: 10.1371/journal.pone.0195939. eCollection 2018. PLoS One. 2018. PMID: 29698490 Free PMC article.
STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse.
Gomez-Cabrero D, Tarazona S, Ferreirós-Vidal I, Ramirez RN, Company C, Schmidt A, Reijmers T, Paul VVS, Marabita F, Rodríguez-Ubreva J, Garcia-Gomez A, Carroll T, Cooper L, Liang Z, Dharmalingam G, van der Kloet F, Harms AC, Balzano-Nogueira L, Lagani V, Tsamardinos I, Lappe M, Maier D, Westerhuis JA, Hankemeier T, Imhof A, Ballestar E, Mortazavi A, Merkenschlager M, Tegner J, Conesa A. Gomez-Cabrero D, et al. Among authors: westerhuis ja. Sci Data. 2019 Oct 31;6(1):256. doi: 10.1038/s41597-019-0202-7. Sci Data. 2019. PMID: 31672995 Free PMC article.
Flavor Profiling Using Comprehensive Mass Spectrometry Analysis of Metabolites in Tomato Soups.
Leygeber S, Grossmann JL, Diez-Simon C, Karu N, Dubbelman AC, Harms AC, Westerhuis JA, Jacobs DM, Lindenburg PW, Hendriks MMWB, Ammerlaan BCH, van den Berg MA, van Doorn R, Mumm R, Hall RD, Smilde AK, Hankemeier T. Leygeber S, et al. Among authors: westerhuis ja. Metabolites. 2022 Nov 29;12(12):1194. doi: 10.3390/metabo12121194. Metabolites. 2022. PMID: 36557232 Free PMC article.
Principal component analysis of binary genomics data.
Song Y, Westerhuis JA, Aben N, Michaut M, Wessels LFA, Smilde AK. Song Y, et al. Among authors: westerhuis ja. Brief Bioinform. 2019 Jan 18;20(1):317-329. doi: 10.1093/bib/bbx119. Brief Bioinform. 2019. PMID: 30657888
Simplivariate models: ideas and first examples.
Hageman JA, Hendriks MM, Westerhuis JA, van der Werf MJ, Berger R, Smilde AK. Hageman JA, et al. Among authors: westerhuis ja. PLoS One. 2008 Sep 23;3(9):e3259. doi: 10.1371/journal.pone.0003259. PLoS One. 2008. PMID: 18810272 Free PMC article.
70 results