Bahrami-Samani E - Search Results

1

Detecting Allele-Specific Alternative Splicing from Population-Scale RNA-Seq Data.

Demirdjian L, Xu Y, Bahrami-Samani E, Pan Y, Stein S, Xie Z, Park E, Wu YN, Xing Y. Demirdjian L, et al. Among authors: bahrami samani e. Am J Hum Genet. 2020 Sep 3;107(3):461-472. doi: 10.1016/j.ajhg.2020.07.005. Epub 2020 Aug 10. Am J Hum Genet. 2020. PMID: 32781045 Free PMC article.

2

Discover hidden splicing variations by mapping personal transcriptomes to personal genomes.

Stein S, Lu ZX, Bahrami-Samani E, Park JW, Xing Y. Stein S, et al. Nucleic Acids Res. 2015 Dec 15;43(22):10612-22. doi: 10.1093/nar/gkv1099. Epub 2015 Nov 17. Nucleic Acids Res. 2015. PMID: 26578562 Free PMC article.

3

Using RNA-Seq to Discover Genetic Polymorphisms That Produce Hidden Splice Variants.

Stein S, Bahrami-Samani E, Xing Y. Stein S, et al. Among authors: bahrami samani e. Methods Mol Biol. 2017;1648:129-142. doi: 10.1007/978-1-4939-7204-3_10. Methods Mol Biol. 2017. PMID: 28766294

4

Discovery of Allele-Specific Protein-RNA Interactions in Human Transcriptomes.

Bahrami-Samani E, Xing Y. Bahrami-Samani E, et al. Am J Hum Genet. 2019 Mar 7;104(3):492-502. doi: 10.1016/j.ajhg.2019.01.018. Epub 2019 Feb 28. Am J Hum Genet. 2019. PMID: 30827501 Free PMC article.

5

αCP binding to a cytosine-rich subset of polypyrimidine tracts drives a novel pathway of cassette exon splicing in the mammalian transcriptome.

Ji X, Park JW, Bahrami-Samani E, Lin L, Duncan-Lewis C, Pherribo G, Xing Y, Liebhaber SA. Ji X, et al. Nucleic Acids Res. 2016 Mar 18;44(5):2283-97. doi: 10.1093/nar/gkw088. Epub 2016 Feb 20. Nucleic Acids Res. 2016. PMID: 26896798 Free PMC article.

6

Rbfox Proteins Regulate Splicing as Part of a Large Multiprotein Complex LASR.

Damianov A, Ying Y, Lin CH, Lee JA, Tran D, Vashisht AA, Bahrami-Samani E, Xing Y, Martin KC, Wohlschlegel JA, Black DL. Damianov A, et al. Among authors: bahrami samani e. Cell. 2016 Apr 21;165(3):606-19. doi: 10.1016/j.cell.2016.03.040. Cell. 2016. PMID: 27104978 Free PMC article.

7

Site identification in high-throughput RNA-protein interaction data.

Uren PJ, Bahrami-Samani E, Burns SC, Qiao M, Karginov FV, Hodges E, Hannon GJ, Sanford JR, Penalva LO, Smith AD. Uren PJ, et al. Bioinformatics. 2012 Dec 1;28(23):3013-20. doi: 10.1093/bioinformatics/bts569. Epub 2012 Sep 28. Bioinformatics. 2012. PMID: 23024010 Free PMC article.

8

Leveraging cross-link modification events in CLIP-seq for motif discovery.

Bahrami-Samani E, Penalva LO, Smith AD, Uren PJ. Bahrami-Samani E, et al. Nucleic Acids Res. 2015 Jan;43(1):95-103. doi: 10.1093/nar/gku1288. Epub 2014 Dec 10. Nucleic Acids Res. 2015. PMID: 25505146 Free PMC article.

9

Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput.

Bahrami-Samani E, Vo DT, de Araujo PR, Vogel C, Smith AD, Penalva LO, Uren PJ. Bahrami-Samani E, et al. Wiley Interdiscip Rev RNA. 2015 May-Jun;6(3):291-310. doi: 10.1002/wrna.1274. Epub 2014 Dec 16. Wiley Interdiscip Rev RNA. 2015. PMID: 25515586 Free PMC article. Review.

10

High-throughput analyses of hnRNP H1 dissects its multi-functional aspect.

Uren PJ, Bahrami-Samani E, de Araujo PR, Vogel C, Qiao M, Burns SC, Smith AD, Penalva LO. Uren PJ, et al. RNA Biol. 2016;13(4):400-11. doi: 10.1080/15476286.2015.1138030. Epub 2016 Jan 13. RNA Biol. 2016. PMID: 26760575 Free PMC article.

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