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Bayesian copy number detection and association in large-scale studies.
Cristiano S, McKean D, Carey J, Bracci P, Brennan P, Chou M, Du M, Gallinger S, Goggins MG, Hassan MM, Hung RJ, Kurtz RC, Li D, Lu L, Neale R, Olson S, Petersen G, Rabe KG, Fu J, Risch H, Rosner GL, Ruczinski I, Klein AP, Scharpf RB. Cristiano S, et al. Among authors: scharpf rb. BMC Cancer. 2020 Sep 7;20(1):856. doi: 10.1186/s12885-020-07304-3. BMC Cancer. 2020. PMID: 32894098 Free PMC article.
SNPchip: R classes and methods for SNP array data.
Scharpf RB, Ting JC, Pevsner J, Ruczinski I. Scharpf RB, et al. Bioinformatics. 2007 Mar 1;23(5):627-8. doi: 10.1093/bioinformatics/btl638. Epub 2007 Jan 4. Bioinformatics. 2007. PMID: 17204461
R classes and methods for SNP array data.
Scharpf RB, Ruczinski I. Scharpf RB, et al. Methods Mol Biol. 2010;593:67-79. doi: 10.1007/978-1-60327-194-3_4. Methods Mol Biol. 2010. PMID: 19957145 Free PMC article.
Cross-platform Comparison of Two Pancreatic Cancer Phenotypes.
Scharpf RB, Iacobuzio-Donahue CA, Cope L, Ruczinski I, Garrett-Mayer E, Lakkur S, Campagna D, Parmigiani G. Scharpf RB, et al. Cancer Inform. 2010 Nov 1;9:257-64. doi: 10.4137/CIN.S5755. Cancer Inform. 2010. PMID: 21082040 Free PMC article.
Performance assessment of copy number microarray platforms using a spike-in experiment.
Halper-Stromberg E, Frelin L, Ruczinski I, Scharpf R, Jie C, Carvalho B, Hao H, Hetrick K, Jedlicka A, Dziedzic A, Doheny K, Scott AF, Baylin S, Pevsner J, Spencer F, Irizarry RA. Halper-Stromberg E, et al. Bioinformatics. 2011 Apr 15;27(8):1052-60. doi: 10.1093/bioinformatics/btr106. Bioinformatics. 2011. PMID: 21478196 Free PMC article.
Detectable clonal mosaicism from birth to old age and its relationship to cancer.
Laurie CC, Laurie CA, Rice K, Doheny KF, Zelnick LR, McHugh CP, Ling H, Hetrick KN, Pugh EW, Amos C, Wei Q, Wang LE, Lee JE, Barnes KC, Hansel NN, Mathias R, Daley D, Beaty TH, Scott AF, Ruczinski I, Scharpf RB, Bierut LJ, Hartz SM, Landi MT, Freedman ND, Goldin LR, Ginsburg D, Li J, Desch KC, Strom SS, Blot WJ, Signorello LB, Ingles SA, Chanock SJ, Berndt SI, Le Marchand L, Henderson BE, Monroe KR, Heit JA, de Andrade M, Armasu SM, Regnier C, Lowe WL, Hayes MG, Marazita ML, Feingold E, Murray JC, Melbye M, Feenstra B, Kang JH, Wiggs JL, Jarvik GP, McDavid AN, Seshan VE, Mirel DB, Crenshaw A, Sharopova N, Wise A, Shen J, Crosslin DR, Levine DM, Zheng X, Udren JI, Bennett S, Nelson SC, Gogarten SM, Conomos MP, Heagerty P, Manolio T, Pasquale LR, Haiman CA, Caporaso N, Weir BS. Laurie CC, et al. Among authors: scharpf rb. Nat Genet. 2012 May 6;44(6):642-50. doi: 10.1038/ng.2271. Nat Genet. 2012. PMID: 22561516 Free PMC article.
84 results