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Dense sampling of bird diversity increases power of comparative genomics.
Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, Andreu-Sánchez S, Margaryan A, Howard JT, Parent C, Pacheco G, Sinding MS, Puetz L, Cavill E, Ribeiro ÂM, Eckhart L, Fjeldså J, Hosner PA, Brumfield RT, Christidis L, Bertelsen MF, Sicheritz-Ponten T, Tietze DT, Robertson BC, Song G, Borgia G, Claramunt S, Lovette IJ, Cowen SJ, Njoroge P, Dumbacher JP, Ryder OA, Fuchs J, Bunce M, Burt DW, Cracraft J, Meng G, Hackett SJ, Ryan PG, Jønsson KA, Jamieson IG, da Fonseca RR, Braun EL, Houde P, Mirarab S, Suh A, Hansson B, Ponnikas S, Sigeman H, Stervander M, Frandsen PB, van der Zwan H, van der Sluis R, Visser C, Balakrishnan CN, Clark AG, Fitzpatrick JW, Bowman R, Chen N, Cloutier A, Sackton TB, Edwards SV, Foote DJ, Shakya SB, Sheldon FH, Vignal A, Soares AER, Shapiro B, González-Solís J, Ferrer-Obiol J, Rozas J, Riutort M, Tigano A, Friesen V, Dalén L, Urrutia AO, Székely T, Liu Y, Campana MG, Corvelo A, Fleischer RC, Rutherford KM, Gemmell NJ, Dussex N, Mouritsen H, Thiele N, Delmore K, Liedvogel M, Franke A, Hoeppner MP, Krone O, Fudickar AM, Milá B, Ketterson ED, Fidler AE, Friis G, Pa… See abstract for full author list ➔ Feng S, et al. Among authors: wang z, wang j, wang b. Nature. 2020 Nov;587(7833):252-257. doi: 10.1038/s41586-020-2873-9. Epub 2020 Nov 11. Nature. 2020. PMID: 33177665 Free PMC article.
Platypus and echidna genomes reveal mammalian biology and evolution.
Zhou Y, Shearwin-Whyatt L, Li J, Song Z, Hayakawa T, Stevens D, Fenelon JC, Peel E, Cheng Y, Pajpach F, Bradley N, Suzuki H, Nikaido M, Damas J, Daish T, Perry T, Zhu Z, Geng Y, Rhie A, Sims Y, Wood J, Haase B, Mountcastle J, Fedrigo O, Li Q, Yang H, Wang J, Johnston SD, Phillippy AM, Howe K, Jarvis ED, Ryder OA, Kaessmann H, Donnelly P, Korlach J, Lewin HA, Graves J, Belov K, Renfree MB, Grutzner F, Zhou Q, Zhang G. Zhou Y, et al. Among authors: wang j. Nature. 2021 Apr;592(7856):756-762. doi: 10.1038/s41586-020-03039-0. Epub 2021 Jan 6. Nature. 2021. PMID: 33408411 Free PMC article.
Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil.
Zhao YP, Fan G, Yin PP, Sun S, Li N, Hong X, Hu G, Zhang H, Zhang FM, Han JD, Hao YJ, Xu Q, Yang X, Xia W, Chen W, Lin HY, Zhang R, Chen J, Zheng XM, Lee SM, Lee J, Uehara K, Wang J, Yang H, Fu CX, Liu X, Xu X, Ge S. Zhao YP, et al. Among authors: wang j. Nat Commun. 2019 Sep 13;10(1):4201. doi: 10.1038/s41467-019-12133-5. Nat Commun. 2019. PMID: 31519986 Free PMC article.
Whole-genome resequencing of 445 Lactuca accessions reveals the domestication history of cultivated lettuce.
Wei T, van Treuren R, Liu X, Zhang Z, Chen J, Liu Y, Dong S, Sun P, Yang T, Lan T, Wang X, Xiong Z, Liu Y, Wei J, Lu H, Han S, Chen JC, Ni X, Wang J, Yang H, Xu X, Kuang H, van Hintum T, Liu X, Liu H. Wei T, et al. Among authors: wang x, wang j. Nat Genet. 2021 May;53(5):752-760. doi: 10.1038/s41588-021-00831-0. Epub 2021 Apr 12. Nat Genet. 2021. PMID: 33846635
A single-cell transcriptomic atlas tracking the neural basis of division of labour in an ant superorganism.
Li Q, Wang M, Zhang P, Liu Y, Guo Q, Zhu Y, Wen T, Dai X, Zhang X, Nagel M, Dethlefsen BH, Xie N, Zhao J, Jiang W, Han L, Wu L, Zhong W, Wang Z, Wei X, Dai W, Liu L, Xu X, Lu H, Yang H, Wang J, Boomsma JJ, Liu C, Zhang G, Liu W. Li Q, et al. Among authors: wang z, wang j, wang m. Nat Ecol Evol. 2022 Aug;6(8):1191-1204. doi: 10.1038/s41559-022-01784-1. Epub 2022 Jun 16. Nat Ecol Evol. 2022. PMID: 35711063 Free PMC article.
Analysis of 427 genomes reveals moso bamboo population structure and genetic basis of property traits.
Zhao H, Sun S, Ding Y, Wang Y, Yue X, Du X, Wei Q, Fan G, Sun H, Lou Y, Yang H, Wang J, Xu X, Li L, Yang K, Xu H, Wang J, Zhu C, Wang S, Shan X, Hou Y, Wang Y, Fei B, Liu X, Jiang Z, Gao Z. Zhao H, et al. Among authors: wang j, wang y, wang s. Nat Commun. 2021 Sep 15;12(1):5466. doi: 10.1038/s41467-021-25795-x. Nat Commun. 2021. PMID: 34526499 Free PMC article.
Genomic basis for RNA alterations in cancer.
PCAWG Transcriptome Core Group; Calabrese C, Davidson NR, Demircioğlu D, Fonseca NA, He Y, Kahles A, Lehmann KV, Liu F, Shiraishi Y, Soulette CM, Urban L, Greger L, Li S, Liu D, Perry MD, Xiang Q, Zhang F, Zhang J, Bailey P, Erkek S, Hoadley KA, Hou Y, Huska MR, Kilpinen H, Korbel JO, Marin MG, Markowski J, Nandi T, Pan-Hammarström Q, Pedamallu CS, Siebert R, Stark SG, Su H, Tan P, Waszak SM, Yung C, Zhu S, Awadalla P, Creighton CJ, Meyerson M, Ouellette BFF, Wu K, Yang H; PCAWG Transcriptome Working Group; Brazma A, Brooks AN, Göke J, Rätsch G, Schwarz RF, Stegle O, Zhang Z; PCAWG Consortium. PCAWG Transcriptome Core Group, et al. Nature. 2020 Feb;578(7793):129-136. doi: 10.1038/s41586-020-1970-0. Epub 2020 Feb 5. Nature. 2020. PMID: 32025019 Free PMC article.
The genomic landscape of Epstein-Barr virus-associated pulmonary lymphoepithelioma-like carcinoma.
Hong S, Liu D, Luo S, Fang W, Zhan J, Fu S, Zhang Y, Wu X, Zhou H, Chen X, Chen G, Zhang Z, Zheng Q, Li X, Chen J, Liu X, Lei M, Ye C, Wang J, Yang H, Xu X, Zhu S, Yang Y, Zhao Y, Zhou N, Zhao H, Huang Y, Zhang L, Wu K, Zhang L. Hong S, et al. Among authors: wang j. Nat Commun. 2019 Jul 16;10(1):3108. doi: 10.1038/s41467-019-10902-w. Nat Commun. 2019. PMID: 31311932 Free PMC article.
The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants.
Li L, Wang S, Wang H, Sahu SK, Marin B, Li H, Xu Y, Liang H, Li Z, Cheng S, Reder T, Çebi Z, Wittek S, Petersen M, Melkonian B, Du H, Yang H, Wang J, Wong GK, Xu X, Liu X, Van de Peer Y, Melkonian M, Liu H. Li L, et al. Among authors: wang h, wang j, wang s. Nat Ecol Evol. 2020 Sep;4(9):1220-1231. doi: 10.1038/s41559-020-1221-7. Epub 2020 Jun 22. Nat Ecol Evol. 2020. PMID: 32572216 Free PMC article.
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