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Using earth mover's distance for viral outbreak investigations.
Melnyk A, Knyazev S, Vannberg F, Bunimovich L, Skums P, Zelikovsky A. Melnyk A, et al. Among authors: vannberg f. BMC Genomics. 2020 Dec 16;21(Suppl 5):582. doi: 10.1186/s12864-020-06982-4. BMC Genomics. 2020. PMID: 33327932 Free PMC article.
Next-Generation Sequencing and Bioinformatics Protocol for Malaria Drug Resistance Marker Surveillance.
Talundzic E, Ravishankar S, Kelley J, Patel D, Plucinski M, Schmedes S, Ljolje D, Clemons B, Madison-Antenucci S, Arguin PM, Lucchi NW, Vannberg F, Udhayakumar V. Talundzic E, et al. Among authors: vannberg f. Antimicrob Agents Chemother. 2018 Mar 27;62(4):e02474-17. doi: 10.1128/AAC.02474-17. Print 2018 Apr. Antimicrob Agents Chemother. 2018. PMID: 29439965 Free PMC article.
Advanced Molecular Detection of Malarone Resistance.
Talundzic E, Plucinski MM, Biliya S, Silva-Flannery LM, Arguin PM, Halsey ES, Barnwell JW, Vannberg F, Udhayakumar V. Talundzic E, et al. Among authors: vannberg f. Antimicrob Agents Chemother. 2016 May 23;60(6):3821-3. doi: 10.1128/AAC.00171-16. Print 2016 Jun. Antimicrob Agents Chemother. 2016. PMID: 27001821 Free PMC article.
KAnalyze: a fast versatile pipelined k-mer toolkit.
Audano P, Vannberg F. Audano P, et al. Among authors: vannberg f. Bioinformatics. 2014 Jul 15;30(14):2070-2. doi: 10.1093/bioinformatics/btu152. Epub 2014 Mar 18. Bioinformatics. 2014. PMID: 24642064 Free PMC article.
TLR-exosomes exhibit distinct kinetics and effector function.
Srinivasan S, Su M, Ravishankar S, Moore J, Head P, Dixon JB, Vannberg F. Srinivasan S, et al. Among authors: vannberg f. Sci Rep. 2017 Mar 14;7:41623. doi: 10.1038/srep41623. Sci Rep. 2017. PMID: 28290538 Free PMC article.
First Full Draft Genome Sequence of Plasmodium brasilianum.
Talundzic E, Ravishankar S, Nayak V, Patel DS, Olsen C, Sheth M, Batra D, Loparev V, Vannberg FO, Udhayakumar V, Barnwell JW. Talundzic E, et al. Genome Announc. 2017 Feb 9;5(6):e01566-16. doi: 10.1128/genomeA.01566-16. Genome Announc. 2017. PMID: 28183758 Free PMC article.
73 results