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Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility.
Warren WC, Harris RA, Haukness M, Fiddes IT, Murali SC, Fernandes J, Dishuck PC, Storer JM, Raveendran M, Hillier LW, Porubsky D, Mao Y, Gordon D, Vollger MR, Lewis AP, Munson KM, DeVogelaere E, Armstrong J, Diekhans M, Walker JA, Tomlinson C, Graves-Lindsay TA, Kremitzki M, Salama SR, Audano PA, Escalona M, Maurer NW, Antonacci F, Mercuri L, Maggiolini FAM, Catacchio CR, Underwood JG, O'Connor DH, Sanders AD, Korbel JO, Ferguson B, Kubisch HM, Picker L, Kalin NH, Rosene D, Levine J, Abbott DH, Gray SB, Sanchez MM, Kovacs-Balint ZA, Kemnitz JW, Thomasy SM, Roberts JA, Kinnally EL, Capitanio JP, Skene JHP, Platt M, Cole SA, Green RE, Ventura M, Wiseman RW, Paten B, Batzer MA, Rogers J, Eichler EE. Warren WC, et al. Among authors: kubisch hm. Science. 2020 Dec 18;370(6523):eabc6617. doi: 10.1126/science.abc6617. Science. 2020. PMID: 33335035 Free PMC article.
The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences.
Xue C, Raveendran M, Harris RA, Fawcett GL, Liu X, White S, Dahdouli M, Rio Deiros D, Below JE, Salerno W, Cox L, Fan G, Ferguson B, Horvath J, Johnson Z, Kanthaswamy S, Kubisch HM, Liu D, Platt M, Smith DG, Sun B, Vallender EJ, Wang F, Wiseman RW, Chen R, Muzny DM, Gibbs RA, Yu F, Rogers J. Xue C, et al. Among authors: kubisch hm. Genome Res. 2016 Dec;26(12):1651-1662. doi: 10.1101/gr.204255.116. Epub 2016 Oct 17. Genome Res. 2016. PMID: 27934697 Free PMC article.
Pedigree reconstruction and distant pairwise relatedness estimation from genome sequence data: A demonstration in a population of rhesus macaques (Macaca mulatta).
Petty LE, Phillippi-Falkenstein K, Kubisch HM, Raveendran M, Harris RA, Vallender EJ, Huff CD, Bohm RP, Rogers J, Below JE. Petty LE, et al. Among authors: kubisch hm. Mol Ecol Resour. 2021 May;21(4):1333-1346. doi: 10.1111/1755-0998.13317. Epub 2021 Jan 27. Mol Ecol Resour. 2021. PMID: 33386679 Free PMC article.
An empirical comparison of short tandem repeats (STRs) and single nucleotide polymorphisms (SNPs) for relatedness estimation in Chinese rhesus macaques (Macaca mulatta).
Ross CT, Weise JA, Bonnar S, Nolin D, Satkoski Trask J, Smith DG, Ferguson B, Ha J, Kubisch HM, Vinson A, Kanthaswamy S. Ross CT, et al. Among authors: kubisch hm. Am J Primatol. 2014 Apr;76(4):313-24. doi: 10.1002/ajp.22235. Epub 2013 Nov 22. Am J Primatol. 2014. PMID: 24273109 Free PMC article.
Resource brief: the National Non-Human Primate DNA Bank.
Ferguson B, Capitanio J, Folks T, Hotchkiss C, Johnson Z, Kean L, Kubisch HM, Lank S, Lyons L, Miller GM, Nylander J, O'Connor D, Vallender EJ, Wiseman R. Ferguson B, et al. Among authors: kubisch hm. Methods. 2009 Sep;49(1):3-4. doi: 10.1016/j.ymeth.2009.07.011. Methods. 2009. PMID: 19706346 Free PMC article.
Resources for genetic management and genomics research on non-human primates at the National Primate Research Centers (NPRCs).
Kanthaswamy S, Capitanio JP, Dubay CJ, Ferguson B, Folks T, Ha JC, Hotchkiss CE, Johnson ZP, Katze MG, Kean LS, Kubisch HM, Lank S, Lyons LA, Miller GM, Nylander J, O'Connor DH, Palermo RE, Smith DG, Vallender EJ, Wiseman RW, Rogers J. Kanthaswamy S, et al. Among authors: kubisch hm. J Med Primatol. 2009 Oct;38 Suppl 1:17-23. doi: 10.1111/j.1600-0684.2009.00371.x. J Med Primatol. 2009. PMID: 19863674
43 results