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Interactive gene networks with KNIT.
Magruder DS, Liebhoff AM, Bethune J, Bonn S. Magruder DS, et al. Among authors: bonn s. Bioinformatics. 2021 Apr 19;37(2):276-278. doi: 10.1093/bioinformatics/btaa1107. Bioinformatics. 2021. PMID: 33416865
Oasis: online analysis of small RNA deep sequencing data.
Capece V, Garcia Vizcaino JC, Vidal R, Rahman RU, Pena Centeno T, Shomroni O, Suberviola I, Fischer A, Bonn S. Capece V, et al. Among authors: bonn s. Bioinformatics. 2015 Jul 1;31(13):2205-7. doi: 10.1093/bioinformatics/btv113. Epub 2015 Feb 19. Bioinformatics. 2015. PMID: 25701573 Free PMC article.
Oasis 2: improved online analysis of small RNA-seq data.
Rahman RU, Gautam A, Bethune J, Sattar A, Fiosins M, Magruder DS, Capece V, Shomroni O, Bonn S. Rahman RU, et al. Among authors: bonn s. BMC Bioinformatics. 2018 Feb 14;19(1):54. doi: 10.1186/s12859-018-2047-z. BMC Bioinformatics. 2018. PMID: 29444641 Free PMC article.
SEAweb: the small RNA Expression Atlas web application.
Rahman RU, Liebhoff AM, Bansal V, Fiosins M, Rajput A, Sattar A, Magruder DS, Madan S, Sun T, Gautam A, Heins S, Liwinski T, Bethune J, Trenkwalder C, Fluck J, Mollenhauer B, Bonn S. Rahman RU, et al. Among authors: bonn s. Nucleic Acids Res. 2020 Jan 8;48(D1):D204-D219. doi: 10.1093/nar/gkz869. Nucleic Acids Res. 2020. PMID: 31598718 Free PMC article.
Pathogen detection in RNA-seq data with Pathonoia.
Liebhoff AM, Menden K, Laschtowitz A, Franke A, Schramm C, Bonn S. Liebhoff AM, et al. Among authors: bonn s. BMC Bioinformatics. 2023 Feb 17;24(1):53. doi: 10.1186/s12859-023-05144-z. BMC Bioinformatics. 2023. PMID: 36803415 Free PMC article.
157 results