Urrutia AO - Search Results

1

Inferring Adaptive Codon Preference to Understand Sources of Selection Shaping Codon Usage Bias.

de Oliveira JL, Morales AC, Hurst LD, Urrutia AO, Thompson CRL, Wolf JB. de Oliveira JL, et al. Among authors: urrutia ao. Mol Biol Evol. 2021 Jul 29;38(8):3247-3266. doi: 10.1093/molbev/msab099. Mol Biol Evol. 2021. PMID: 33871580 Free PMC article.

2

Codon usage bias covaries with expression breadth and the rate of synonymous evolution in humans, but this is not evidence for selection.

Urrutia AO, Hurst LD. Urrutia AO, et al. Genetics. 2001 Nov;159(3):1191-9. doi: 10.1093/genetics/159.3.1191. Genetics. 2001. PMID: 11729162 Free PMC article.

3

Clustering of housekeeping genes provides a unified model of gene order in the human genome.

Lercher MJ, Urrutia AO, Hurst LD. Lercher MJ, et al. Among authors: urrutia ao. Nat Genet. 2002 Jun;31(2):180-3. doi: 10.1038/ng887. Epub 2002 May 6. Nat Genet. 2002. PMID: 11992122

4

Evidence that the human X chromosome is enriched for male-specific but not female-specific genes.

Lercher MJ, Urrutia AO, Hurst LD. Lercher MJ, et al. Among authors: urrutia ao. Mol Biol Evol. 2003 Jul;20(7):1113-6. doi: 10.1093/molbev/msg131. Epub 2003 May 30. Mol Biol Evol. 2003. PMID: 12777530

5

A unification of mosaic structures in the human genome.

Lercher MJ, Urrutia AO, Pavlícek A, Hurst LD. Lercher MJ, et al. Among authors: urrutia ao. Hum Mol Genet. 2003 Oct 1;12(19):2411-5. doi: 10.1093/hmg/ddg251. Epub 2003 Jul 29. Hum Mol Genet. 2003. PMID: 12915446

6

The signature of selection mediated by expression on human genes.

Urrutia AO, Hurst LD. Urrutia AO, et al. Genome Res. 2003 Oct;13(10):2260-4. doi: 10.1101/gr.641103. Epub 2003 Sep 15. Genome Res. 2003. PMID: 12975314 Free PMC article.

7

Splicing and the evolution of proteins in mammals.

Parmley JL, Urrutia AO, Potrzebowski L, Kaessmann H, Hurst LD. Parmley JL, et al. Among authors: urrutia ao. PLoS Biol. 2007 Feb;5(2):e14. doi: 10.1371/journal.pbio.0050014. PLoS Biol. 2007. PMID: 17298171 Free PMC article.

8

Chromatin remodelling is a major source of coexpression of linked genes in yeast.

Batada NN, Urrutia AO, Hurst LD. Batada NN, et al. Among authors: urrutia ao. Trends Genet. 2007 Oct;23(10):480-4. doi: 10.1016/j.tig.2007.08.003. Epub 2007 Sep 5. Trends Genet. 2007. PMID: 17822800

9

Do Alu repeats drive the evolution of the primate transcriptome?

Urrutia AO, Ocaña LB, Hurst LD. Urrutia AO, et al. Genome Biol. 2008;9(2):R25. doi: 10.1186/gb-2008-9-2-r25. Epub 2008 Feb 1. Genome Biol. 2008. PMID: 18241332 Free PMC article.

10

Evidence for deep phylogenetic conservation of exonic splice-related constraints: splice-related skews at exonic ends in the brown alga Ectocarpus are common and resemble those seen in humans.

Wu X, Tronholm A, Cáceres EF, Tovar-Corona JM, Chen L, Urrutia AO, Hurst LD. Wu X, et al. Among authors: urrutia ao. Genome Biol Evol. 2013;5(9):1731-45. doi: 10.1093/gbe/evt115. Genome Biol Evol. 2013. PMID: 23902749 Free PMC article.

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