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DOE JGI Metagenome Workflow.
Clum A, Huntemann M, Bushnell B, Foster B, Foster B, Roux S, Hajek PP, Varghese N, Mukherjee S, Reddy TBK, Daum C, Yoshinaga Y, O'Malley R, Seshadri R, Kyrpides NC, Eloe-Fadrosh EA, Chen IA, Copeland A, Ivanova NN. Clum A, et al. mSystems. 2021 May 18;6(3):e00804-20. doi: 10.1128/mSystems.00804-20. mSystems. 2021. PMID: 34006627 Free PMC article.
One bacterial cell, one complete genome.
Woyke T, Tighe D, Mavromatis K, Clum A, Copeland A, Schackwitz W, Lapidus A, Wu D, McCutcheon JP, McDonald BR, Moran NA, Bristow J, Cheng JF. Woyke T, et al. Among authors: clum a. PLoS One. 2010 Apr 23;5(4):e10314. doi: 10.1371/journal.pone.0010314. PLoS One. 2010. PMID: 20428247 Free PMC article.
Genomes of three methylotrophs from a single niche reveal the genetic and metabolic divergence of the methylophilaceae.
Lapidus A, Clum A, Labutti K, Kaluzhnaya MG, Lim S, Beck DA, Glavina Del Rio T, Nolan M, Mavromatis K, Huntemann M, Lucas S, Lidstrom ME, Ivanova N, Chistoserdova L. Lapidus A, et al. Among authors: clum a. J Bacteriol. 2011 Aug;193(15):3757-64. doi: 10.1128/JB.00404-11. Epub 2011 May 27. J Bacteriol. 2011. PMID: 21622745 Free PMC article.
Generation of long insert pairs using a Cre-LoxP Inverse PCR approach.
Peng Z, Zhao Z, Nath N, Froula JL, Clum A, Zhang T, Cheng JF, Copeland AC, Pennacchio LA, Chen F. Peng Z, et al. Among authors: clum a. PLoS One. 2012;7(1):e29437. doi: 10.1371/journal.pone.0029437. Epub 2012 Jan 9. PLoS One. 2012. PMID: 22253722 Free PMC article.
High-Quality Draft Genome Sequence of Kallotenue papyrolyticum JKG1T Reveals Broad Heterotrophic Capacity Focused on Carbohydrate and Amino Acid Metabolism.
Hedlund BP, Murugapiran SK, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Duffy K, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Williams AJ, Cole JK, Dodsworth JA, Woyke T. Hedlund BP, et al. Among authors: clum a. Genome Announc. 2015 Dec 3;3(6):e01410-15. doi: 10.1128/genomeA.01410-15. Genome Announc. 2015. PMID: 26634758 Free PMC article.
High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway.
Zhou EM, Murugapiran SK, Mefferd CC, Liu L, Xian WD, Yin YR, Ming H, Yu TT, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Spunde A, Kyrpides N, Woyke T, Li WJ, Hedlund BP. Zhou EM, et al. Among authors: clum a. Stand Genomic Sci. 2016 Feb 27;11:20. doi: 10.1186/s40793-016-0140-3. eCollection 2016. Stand Genomic Sci. 2016. PMID: 26925197 Free PMC article.
High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, China.
Mefferd CC, Zhou EM, Yu TT, Ming H, Murugapiran SK, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Duffy K, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Williams AJ, Woyke T, Li WJ, Hedlund BP. Mefferd CC, et al. Among authors: clum a. Genome Announc. 2016 Apr 28;4(2):e00312-16. doi: 10.1128/genomeA.00312-16. Genome Announc. 2016. PMID: 27125486 Free PMC article.
Draft Genome Sequence of Frankia Strain G2, a Nitrogen-Fixing Actinobacterium Isolated from Casuarina equisetifolia and Able To Nodulate Actinorhizal Plants of the Order Rhamnales.
Nouioui I, Gtari M, Göker M, Ghodhbane-Gtari F, Tisa LS, Fernandez MP, Normand P, Huntemann M, Clum A, Pillay M, Varghese N, Reddy TB, Ivanova N, Woyke T, Kyrpides NC, Klenk HP. Nouioui I, et al. Among authors: clum a. Genome Announc. 2016 May 26;4(3):e00437-16. doi: 10.1128/genomeA.00437-16. Genome Announc. 2016. PMID: 27231368 Free PMC article.
Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil.
Rice MC, Norton JM, Valois F, Bollmann A, Bottomley PJ, Klotz MG, Laanbroek HJ, Suwa Y, Stein LY, Sayavedra-Soto L, Woyke T, Shapiro N, Goodwin LA, Huntemann M, Clum A, Pillay M, Kyrpides N, Varghese N, Mikhailova N, Markowitz V, Palaniappan K, Ivanova N, Stamatis D, Reddy TB, Ngan CY, Daum C. Rice MC, et al. Among authors: clum a. Stand Genomic Sci. 2016 Jul 28;11:46. doi: 10.1186/s40793-016-0168-4. eCollection 2016. Stand Genomic Sci. 2016. PMID: 27471578 Free PMC article.
113 results