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DOE JGI Metagenome Workflow.
mSystems. 2021 May 18;6(3):e00804-20. doi: 10.1128/mSystems.00804-20.
mSystems. 2021.
PMID: 34006627
Free PMC article.
The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities.
Chen IA, Chu K, Palaniappan K, Ratner A, Huang J, Huntemann M, Hajek P, Ritter S, Varghese N, Seshadri R, Roux S, Woyke T, Eloe-Fadrosh EA, Ivanova NN, Kyrpides NC.
Chen IA, et al.
Nucleic Acids Res. 2021 Jan 8;49(D1):D751-D763. doi: 10.1093/nar/gkaa939.
Nucleic Acids Res. 2021.
PMID: 33119741
Free PMC article.
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The IMG/M data management and analysis system v.7: content updates and new features.
Chen IA, Chu K, Palaniappan K, Ratner A, Huang J, Huntemann M, Hajek P, Ritter SJ, Webb C, Wu D, Varghese NJ, Reddy TBK, Mukherjee S, Ovchinnikova G, Nolan M, Seshadri R, Roux S, Visel A, Woyke T, Eloe-Fadrosh EA, Kyrpides NC, Ivanova NN.
Chen IA, et al.
Nucleic Acids Res. 2023 Jan 6;51(D1):D723-D732. doi: 10.1093/nar/gkac976.
Nucleic Acids Res. 2023.
PMID: 36382399
Free PMC article.
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Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes.
Seshadri R, Roux S, Huber KJ, Wu D, Yu S, Udwary D, Call L, Nayfach S, Hahnke RL, Pukall R, White JR, Varghese NJ, Webb C, Palaniappan K, Reimer LC, Sardà J, Bertsch J, Mukherjee S, Reddy TBK, Hajek PP, Huntemann M, Chen IA, Spunde A, Clum A, Shapiro N, Wu ZY, Zhao Z, Zhou Y, Evtushenko L, Thijs S, Stevens V, Eloe-Fadrosh EA, Mouncey NJ, Yoshikuni Y, Whitman WB, Klenk HP, Woyke T, Göker M, Kyrpides NC, Ivanova NN.
Seshadri R, et al. Among authors: hajek pp.
Cell Genom. 2022 Nov 11;2(12):100213. doi: 10.1016/j.xgen.2022.100213. eCollection 2022 Dec 14.
Cell Genom. 2022.
PMID: 36778052
Free PMC article.
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Metatranscriptomes of California grassland soil microbial communities in response to rewetting.
Chuckran PF, Estera-Molina K, Huntemann M, Foster B, Roux S, Mukherjee S, Hajek P, Reddy TBK, Daum C, Chen I-MA, Pennacchio C, Eloe-Fadrosh EA, Dijkstra P, Firestone MK, Blazewicz SJ, Pett-Ridge J.
Chuckran PF, et al.
Microbiol Resour Announc. 2024 May 21:e0032224. doi: 10.1128/mra.00322-24. Online ahead of print.
Microbiol Resour Announc. 2024.
PMID: 38771040
Free article.
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