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QSIPrep: an integrative platform for preprocessing and reconstructing diffusion MRI data.
Cieslak M, Cook PA, He X, Yeh FC, Dhollander T, Adebimpe A, Aguirre GK, Bassett DS, Betzel RF, Bourque J, Cabral LM, Davatzikos C, Detre JA, Earl E, Elliott MA, Fadnavis S, Fair DA, Foran W, Fotiadis P, Garyfallidis E, Giesbrecht B, Gur RC, Gur RE, Kelz MB, Keshavan A, Larsen BS, Luna B, Mackey AP, Milham MP, Oathes DJ, Perrone A, Pines AR, Roalf DR, Richie-Halford A, Rokem A, Sydnor VJ, Tapera TM, Tooley UA, Vettel JM, Yeatman JD, Grafton ST, Satterthwaite TD. Cieslak M, et al. Among authors: garyfallidis e. Nat Methods. 2021 Jul;18(7):775-778. doi: 10.1038/s41592-021-01185-5. Epub 2021 Jun 21. Nat Methods. 2021. PMID: 34155395 Free PMC article.
The challenge of mapping the human connectome based on diffusion tractography.
Maier-Hein KH, Neher PF, Houde JC, Côté MA, Garyfallidis E, Zhong J, Chamberland M, Yeh FC, Lin YC, Ji Q, Reddick WE, Glass JO, Chen DQ, Feng Y, Gao C, Wu Y, Ma J, He R, Li Q, Westin CF, Deslauriers-Gauthier S, González JOO, Paquette M, St-Jean S, Girard G, Rheault F, Sidhu J, Tax CMW, Guo F, Mesri HY, Dávid S, Froeling M, Heemskerk AM, Leemans A, Boré A, Pinsard B, Bedetti C, Desrosiers M, Brambati S, Doyon J, Sarica A, Vasta R, Cerasa A, Quattrone A, Yeatman J, Khan AR, Hodges W, Alexander S, Romascano D, Barakovic M, Auría A, Esteban O, Lemkaddem A, Thiran JP, Cetingul HE, Odry BL, Mailhe B, Nadar MS, Pizzagalli F, Prasad G, Villalon-Reina JE, Galvis J, Thompson PM, Requejo FS, Laguna PL, Lacerda LM, Barrett R, Dell'Acqua F, Catani M, Petit L, Caruyer E, Daducci A, Dyrby TB, Holland-Letz T, Hilgetag CC, Stieltjes B, Descoteaux M. Maier-Hein KH, et al. Among authors: garyfallidis e. Nat Commun. 2017 Nov 7;8(1):1349. doi: 10.1038/s41467-017-01285-x. Nat Commun. 2017. PMID: 29116093 Free PMC article.
Diffusional Kurtosis Imaging in the Diffusion Imaging in Python Project.
Henriques RN, Correia MM, Marrale M, Huber E, Kruper J, Koudoro S, Yeatman JD, Garyfallidis E, Rokem A. Henriques RN, et al. Among authors: garyfallidis e. Front Hum Neurosci. 2021 Jul 19;15:675433. doi: 10.3389/fnhum.2021.675433. eCollection 2021. Front Hum Neurosci. 2021. PMID: 34349631 Free PMC article.
Evaluating the Reliability of Human Brain White Matter Tractometry.
Kruper J, Yeatman JD, Richie-Halford A, Bloom D, Grotheer M, Caffarra S, Kiar G, Karipidis II, Roy E, Chandio BQ, Garyfallidis E, Rokem A. Kruper J, et al. Among authors: garyfallidis e. Apert Neuro. 2021;1(1):10.52294/e6198273-b8e3-4b63-babb-6e6b0da10669. doi: 10.52294/e6198273-b8e3-4b63-babb-6e6b0da10669. Epub 2021 Nov 17. Apert Neuro. 2021. PMID: 35079748 Free PMC article.
MASiVar: Multisite, multiscanner, and multisubject acquisitions for studying variability in diffusion weighted MRI.
Cai LY, Yang Q, Kanakaraj P, Nath V, Newton AT, Edmonson HA, Luci J, Conrad BN, Price GR, Hansen CB, Kerley CI, Ramadass K, Yeh FC, Kang H, Garyfallidis E, Descoteaux M, Rheault F, Schilling KG, Landman BA. Cai LY, et al. Among authors: garyfallidis e. Magn Reson Med. 2021 Dec;86(6):3304-3320. doi: 10.1002/mrm.28926. Epub 2021 Jul 16. Magn Reson Med. 2021. PMID: 34270123 Free PMC article.
On the generalizability of diffusion MRI signal representations across acquisition parameters, sequences and tissue types: Chronicles of the MEMENTO challenge.
De Luca A, Ianus A, Leemans A, Palombo M, Shemesh N, Zhang H, Alexander DC, Nilsson M, Froeling M, Biessels GJ, Zucchelli M, Frigo M, Albay E, Sedlar S, Alimi A, Deslauriers-Gauthier S, Deriche R, Fick R, Afzali M, Pieciak T, Bogusz F, Aja-Fernández S, Özarslan E, Jones DK, Chen H, Jin M, Zhang Z, Wang F, Nath V, Parvathaneni P, Morez J, Sijbers J, Jeurissen B, Fadnavis S, Endres S, Rokem A, Garyfallidis E, Sanchez I, Prchkovska V, Rodrigues P, Landman BA, Schilling KG. De Luca A, et al. Among authors: garyfallidis e. Neuroimage. 2021 Oct 15;240:118367. doi: 10.1016/j.neuroimage.2021.118367. Epub 2021 Jul 6. Neuroimage. 2021. PMID: 34237442 Free PMC article.
Dipy, a library for the analysis of diffusion MRI data.
Garyfallidis E, Brett M, Amirbekian B, Rokem A, van der Walt S, Descoteaux M, Nimmo-Smith I; Dipy Contributors. Garyfallidis E, et al. Front Neuroinform. 2014 Feb 21;8:8. doi: 10.3389/fninf.2014.00008. eCollection 2014. Front Neuroinform. 2014. PMID: 24600385 Free PMC article.
Bifurcated Topological Optimization for IVIM.
Fadnavis S, Endres S, Wen Q, Wu YC, Cheng H, Koudoro S, Rane S, Rokem A, Garyfallidis E. Fadnavis S, et al. Among authors: garyfallidis e. Front Neurosci. 2021 Dec 15;15:779025. doi: 10.3389/fnins.2021.779025. eCollection 2021. Front Neurosci. 2021. PMID: 34975382 Free PMC article.
40 results