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Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction.
Nucleic Acids Res. 2021 Sep 27;49(17):e102. doi: 10.1093/nar/gkab576.
Nucleic Acids Res. 2021.
PMID: 34214168
Free PMC article.
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
Tsyvina V, Campo DS, Sims S, Zelikovsky A, Khudyakov Y, Skums P.
Tsyvina V, et al.
BMC Bioinformatics. 2018 Oct 22;19(Suppl 11):360. doi: 10.1186/s12859-018-2333-9.
BMC Bioinformatics. 2018.
PMID: 30343669
Free PMC article.
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Inference of clonal selection in cancer populations using single-cell sequencing data.
Skums P, Tsyvina V, Zelikovsky A.
Skums P, et al. Among authors: tsyvina v.
Bioinformatics. 2019 Jul 15;35(14):i398-i407. doi: 10.1093/bioinformatics/btz392.
Bioinformatics. 2019.
PMID: 31510696
Free PMC article.
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Inference of mutability landscapes of tumors from single cell sequencing data.
Tsyvina V, Zelikovsky A, Snir S, Skums P.
Tsyvina V, et al.
PLoS Comput Biol. 2020 Nov 30;16(11):e1008454. doi: 10.1371/journal.pcbi.1008454. eCollection 2020 Nov.
PLoS Comput Biol. 2020.
PMID: 33253159
Free PMC article.
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Delineating Surface Epitopes of Lyme Disease Pathogen Targeted by Highly Protective Antibodies of New Zealand White Rabbits.
Rogovskyy AS, Caoili SEC, Ionov Y, Piontkivska H, Skums P, Tsyvina V, Zelikovsky A, Waghela SD.
Rogovskyy AS, et al. Among authors: tsyvina v.
Infect Immun. 2019 Jul 23;87(8):e00246-19. doi: 10.1128/IAI.00246-19. Print 2019 Aug.
Infect Immun. 2019.
PMID: 31085705
Free PMC article.
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SOPHIE: Viral outbreak investigation and transmission history reconstruction in a joint phylogenetic and network theory framework.
Skums P, Mohebbi F, Tsyvina V, Baykal PI, Nemira A, Ramachandran S, Khudyakov Y.
Skums P, et al. Among authors: tsyvina v.
Cell Syst. 2022 Oct 19;13(10):844-856.e4. doi: 10.1016/j.cels.2022.07.005.
Cell Syst. 2022.
PMID: 36265470
Free PMC article.
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