Shepherd AJ - Search Results

1

Characterization of the MurT/GatD complex in Mycobacterium tuberculosis towards validating a novel anti-tubercular drug target.

Maitra A, Nukala S, Dickman R, Martin LT, Munshi T, Gupta A, Shepherd AJ, Arnvig KB, Tabor AB, Keep NH, Bhakta S. Maitra A, et al. Among authors: shepherd aj. JAC Antimicrob Resist. 2021 Mar 16;3(1):dlab028. doi: 10.1093/jacamr/dlab028. eCollection 2021 Mar. JAC Antimicrob Resist. 2021. PMID: 34223102 Free PMC article.

2

Mining biological networks from full-text articles.

Czarnecki J, Shepherd AJ. Czarnecki J, et al. Among authors: shepherd aj. Methods Mol Biol. 2014;1159:135-45. doi: 10.1007/978-1-4939-0709-0_8. Methods Mol Biol. 2014. PMID: 24788265 Review.

3

Investigating Substitutions in Antibody-Antigen Complexes Using Molecular Dynamics: A Case Study with Broad-spectrum, Influenza A Antibodies.

Lees WD, Stejskal L, Moss DS, Shepherd AJ. Lees WD, et al. Among authors: shepherd aj. Front Immunol. 2017 Feb 15;8:143. doi: 10.3389/fimmu.2017.00143. eCollection 2017. Front Immunol. 2017. PMID: 28261207 Free PMC article.

4

HVint: A Strategy for Identifying Novel Protein-Protein Interactions in Herpes Simplex Virus Type 1.

Ashford P, Hernandez A, Greco TM, Buch A, Sodeik B, Cristea IM, Grünewald K, Shepherd A, Topf M. Ashford P, et al. Mol Cell Proteomics. 2016 Sep;15(9):2939-53. doi: 10.1074/mcp.M116.058552. Epub 2016 Jul 6. Mol Cell Proteomics. 2016. PMID: 27384951 Free PMC article.

5

N-linked glycans on influenza A H3N2 hemagglutinin constrain binding of host antibodies, but shielding is limited.

Pentiah K, Lees WD, Moss DS, Shepherd AJ. Pentiah K, et al. Among authors: shepherd aj. Glycobiology. 2015 Jan;25(1):124-32. doi: 10.1093/glycob/cwu097. Epub 2014 Sep 16. Glycobiology. 2015. PMID: 25227423

6

Flexibility and intrinsic disorder are conserved features of hepatitis C virus E2 glycoprotein.

Stejskal L, Lees WD, Moss DS, Palor M, Bingham RJ, Shepherd AJ, Grove J. Stejskal L, et al. Among authors: shepherd aj. PLoS Comput Biol. 2020 Feb 28;16(2):e1007710. doi: 10.1371/journal.pcbi.1007710. eCollection 2020 Feb. PLoS Comput Biol. 2020. PMID: 32109245 Free PMC article.

7

Constructing computational pipelines.

Halling-Brown M, Shepherd AJ. Halling-Brown M, et al. Among authors: shepherd aj. Methods Mol Biol. 2008;453:451-70. doi: 10.1007/978-1-60327-429-6_24. Methods Mol Biol. 2008. PMID: 18712319

8

Text mining.

Clegg AB, Shepherd AJ. Clegg AB, et al. Among authors: shepherd aj. Methods Mol Biol. 2008;453:471-91. doi: 10.1007/978-1-60327-429-6_25. Methods Mol Biol. 2008. PMID: 18712320

9

A realistic assessment of methods for extracting gene/protein interactions from free text.

Kabiljo R, Clegg AB, Shepherd AJ. Kabiljo R, et al. Among authors: shepherd aj. BMC Bioinformatics. 2009 Jul 28;10:233. doi: 10.1186/1471-2105-10-233. BMC Bioinformatics. 2009. PMID: 19635172 Free PMC article.

10

A text-mining system for extracting metabolic reactions from full-text articles.

Czarnecki J, Nobeli I, Smith AM, Shepherd AJ. Czarnecki J, et al. Among authors: shepherd aj. BMC Bioinformatics. 2012 Jul 23;13:172. doi: 10.1186/1471-2105-13-172. BMC Bioinformatics. 2012. PMID: 22823282 Free PMC article.

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