Agarwala R - Search Results

1

SAUTE: sequence assembly using target enrichment.

Souvorov A, Agarwala R. Souvorov A, et al. Among authors: agarwala r. BMC Bioinformatics. 2021 Jul 21;22(1):375. doi: 10.1186/s12859-021-04174-9. BMC Bioinformatics. 2021. PMID: 34289805 Free PMC article.

2

Insights into social insects from the genome of the honeybee Apis mellifera.

Honeybee Genome Sequencing Consortium. Honeybee Genome Sequencing Consortium. Nature. 2006 Oct 26;443(7114):931-49. doi: 10.1038/nature05260. Nature. 2006. PMID: 17073008 Free PMC article.

3

SKESA: strategic k-mer extension for scrupulous assemblies.

Souvorov A, Agarwala R, Lipman DJ. Souvorov A, et al. Among authors: agarwala r. Genome Biol. 2018 Oct 4;19(1):153. doi: 10.1186/s13059-018-1540-z. Genome Biol. 2018. PMID: 30286803 Free PMC article.

4

SRPRISM (Single Read Paired Read Indel Substitution Minimizer): an efficient aligner for assemblies with explicit guarantees.

Morgulis A, Agarwala R. Morgulis A, et al. Among authors: agarwala r. Gigascience. 2020 Apr 1;9(4):giaa023. doi: 10.1093/gigascience/giaa023. Gigascience. 2020. PMID: 32315028 Free PMC article.

5

Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST.

Gertz EM, Yu YK, Agarwala R, Schäffer AA, Altschul SF. Gertz EM, et al. Among authors: agarwala r. BMC Biol. 2006 Dec 7;4:41. doi: 10.1186/1741-7007-4-41. BMC Biol. 2006. PMID: 17156431 Free PMC article.

6

X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species.

Shen Y, Chalopin D, Garcia T, Boswell M, Boswell W, Shiryev SA, Agarwala R, Volff JN, Postlethwait JH, Schartl M, Minx P, Warren WC, Walter RB. Shen Y, et al. Among authors: agarwala r. BMC Genomics. 2016 Jan 7;17:37. doi: 10.1186/s12864-015-2361-z. BMC Genomics. 2016. PMID: 26742787 Free PMC article.

7

Sequence variations in the public human genome data reflect a bottlenecked population history.

Marth G, Schuler G, Yeh R, Davenport R, Agarwala R, Church D, Wheelan S, Baker J, Ward M, Kholodov M, Phan L, Czabarka E, Murvai J, Cutler D, Wooding S, Rogers A, Chakravarti A, Harpending HC, Kwok PY, Sherry ST. Marth G, et al. Among authors: agarwala r. Proc Natl Acad Sci U S A. 2003 Jan 7;100(1):376-81. doi: 10.1073/pnas.222673099. Epub 2002 Dec 26. Proc Natl Acad Sci U S A. 2003. PMID: 12502794 Free PMC article.

8

Accuracy and coverage assessment of Oryctolagus cuniculus (rabbit) genes encoding immunoglobulins in the whole genome sequence assembly (OryCun2.0) and localization of the IGH locus to chromosome 20.

Gertz EM, Schäffer AA, Agarwala R, Bonnet-Garnier A, Rogel-Gaillard C, Hayes H, Mage RG. Gertz EM, et al. Among authors: agarwala r. Immunogenetics. 2013 Oct;65(10):749-62. doi: 10.1007/s00251-013-0722-9. Epub 2013 Aug 8. Immunogenetics. 2013. PMID: 23925440 Free PMC article.

9

WindowMasker: window-based masker for sequenced genomes.

Morgulis A, Gertz EM, Schäffer AA, Agarwala R. Morgulis A, et al. Among authors: agarwala r. Bioinformatics. 2006 Jan 15;22(2):134-41. doi: 10.1093/bioinformatics/bti774. Epub 2005 Nov 15. Bioinformatics. 2006. PMID: 16287941

10

rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality control.

Schäffer AA, Rice ES, Cook W, Agarwala R. Schäffer AA, et al. Among authors: agarwala r. Bioinformatics. 2007 May 1;23(9):1156-8. doi: 10.1093/bioinformatics/btm077. Epub 2007 Mar 1. Bioinformatics. 2007. PMID: 17332018 Free PMC article.

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