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New restraints and validation approaches for nucleic acid structures in PDB-REDO.
de Vries I, Kwakman T, Lu XJ, Hekkelman ML, Deshpande M, Velankar S, Perrakis A, Joosten RP. de Vries I, et al. Acta Crystallogr D Struct Biol. 2021 Sep 1;77(Pt 9):1127-1141. doi: 10.1107/S2059798321007610. Epub 2021 Aug 24. Acta Crystallogr D Struct Biol. 2021. PMID: 34473084 Free PMC article.
AlphaFill: enriching AlphaFold models with ligands and cofactors.
Hekkelman ML, de Vries I, Joosten RP, Perrakis A. Hekkelman ML, et al. Among authors: de vries i. Nat Methods. 2023 Feb;20(2):205-213. doi: 10.1038/s41592-022-01685-y. Epub 2022 Nov 24. Nat Methods. 2023. PMID: 36424442 Free PMC article.
Distant sequence regions of JBP1 contribute to J-DNA binding.
de Vries I, Ammerlaan D, Heidebrecht T, Celie PH, Geerke DP, Joosten RP, Perrakis A. de Vries I, et al. Life Sci Alliance. 2023 Jun 16;6(9):e202302150. doi: 10.26508/lsa.202302150. Print 2023 Sep. Life Sci Alliance. 2023. PMID: 37328191 Free PMC article.
Fully closed and automated enrichment of primary blood dendritic cells for cancer immunotherapy.
Schreibelt G, Duiveman-de Boer T, Pots JM, van Oorschot TGM, de Boer AJ, Scharenborg NM, van de Rakt MWMM, Bos K, de Goede AL, Petry K, Brüning M, Angerer C, Schöggl C, Dzionek A, de Vries IJM. Schreibelt G, et al. Among authors: de vries ijm. Methods Cell Biol. 2024;183:33-50. doi: 10.1016/bs.mcb.2023.05.008. Epub 2023 Sep 15. Methods Cell Biol. 2024. PMID: 38548417
cDC2 plasticity and acquisition of a DC3-like phenotype mediated by IL-6 and PGE2 in a patient-derived colorectal cancer organoids model.
Subtil B, van der Hoorn IAE, Cuenca-Escalona J, Becker AMD, Alvarez-Begue M, Iyer KK, Janssen J, van Oorschot T, Poel D, Gorris MAJ, van den Dries K, Cambi A, Tauriello DVF, de Vries IJM. Subtil B, et al. Among authors: de vries ijm. Eur J Immunol. 2024 Mar 21:e2350891. doi: 10.1002/eji.202350891. Online ahead of print. Eur J Immunol. 2024. PMID: 38509863
Frontline and Relapsed Rhabdomyosarcoma (FAR-RMS) Clinical Trial: A Report from the European Paediatric Soft Tissue Sarcoma Study Group (EpSSG).
Chisholm J, Mandeville H, Adams M, Minard-Collin V, Rogers T, Kelsey A, Shipley J, van Rijn RR, de Vries I, van Ewijk R, de Keizer B, Gatz SA, Casanova M, Hjalgrim LL, Firth C, Wheatley K, Kearns P, Liu W, Kirkham A, Rees H, Bisogno G, Wasti A, Wakeling S, Heenen D, Tweddle DA, Merks JHM, Jenney M. Chisholm J, et al. Among authors: de vries i. Cancers (Basel). 2024 Feb 29;16(5):998. doi: 10.3390/cancers16050998. Cancers (Basel). 2024. PMID: 38473359 Free PMC article.
391 results