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MISpheroID: a knowledgebase and transparency tool for minimum information in spheroid identity.
Peirsman A, Blondeel E, Ahmed T, Anckaert J, Audenaert D, Boterberg T, Buzas K, Carragher N, Castellani G, Castro F, Dangles-Marie V, Dawson J, De Tullio P, De Vlieghere E, Dedeyne S, Depypere H, Diosdi A, Dmitriev RI, Dolznig H, Fischer S, Gespach C, Goossens V, Heino J, Hendrix A, Horvath P, Kunz-Schughart LA, Maes S, Mangodt C, Mestdagh P, Michlíková S, Oliveira MJ, Pampaloni F, Piccinini F, Pinheiro C, Rahn J, Robbins SM, Siljamäki E, Steigemann P, Sys G, Takayama S, Tesei A, Tulkens J, Van Waeyenberge M, Vandesompele J, Wagemans G, Weindorfer C, Yigit N, Zablowsky N, Zanoni M, Blondeel P, De Wever O. Peirsman A, et al. Among authors: anckaert j. Nat Methods. 2021 Nov;18(11):1294-1303. doi: 10.1038/s41592-021-01291-4. Epub 2021 Nov 1. Nat Methods. 2021. PMID: 34725485 Free PMC article.
miRBase Tracker: keeping track of microRNA annotation changes.
Van Peer G, Lefever S, Anckaert J, Beckers A, Rihani A, Van Goethem A, Volders PJ, Zeka F, Ongenaert M, Mestdagh P, Vandesompele J. Van Peer G, et al. Among authors: anckaert j. Database (Oxford). 2014 Aug 25;2014:bau080. doi: 10.1093/database/bau080. Print 2014. Database (Oxford). 2014. PMID: 25157074 Free PMC article.
EV-TRACK: transparent reporting and centralizing knowledge in extracellular vesicle research.
EV-TRACK Consortium; Van Deun J, Mestdagh P, Agostinis P, Akay Ö, Anand S, Anckaert J, Martinez ZA, Baetens T, Beghein E, Bertier L, Berx G, Boere J, Boukouris S, Bremer M, Buschmann D, Byrd JB, Casert C, Cheng L, Cmoch A, Daveloose D, De Smedt E, Demirsoy S, Depoorter V, Dhondt B, Driedonks TA, Dudek A, Elsharawy A, Floris I, Foers AD, Gärtner K, Garg AD, Geeurickx E, Gettemans J, Ghazavi F, Giebel B, Kormelink TG, Hancock G, Helsmoortel H, Hill AF, Hyenne V, Kalra H, Kim D, Kowal J, Kraemer S, Leidinger P, Leonelli C, Liang Y, Lippens L, Liu S, Lo Cicero A, Martin S, Mathivanan S, Mathiyalagan P, Matusek T, Milani G, Monguió-Tortajada M, Mus LM, Muth DC, Németh A, Nolte-'t Hoen EN, O'Driscoll L, Palmulli R, Pfaffl MW, Primdal-Bengtson B, Romano E, Rousseau Q, Sahoo S, Sampaio N, Samuel M, Scicluna B, Soen B, Steels A, Swinnen JV, Takatalo M, Thaminy S, Théry C, Tulkens J, Van Audenhove I, van der Grein S, Van Goethem A, van Herwijnen MJ, Van Niel G, Van Roy N, Van Vliet AR, Vandamme N, Vanhauwaert S, Vergauwen G, Verweij F, Wallaert A, Wauben M, Witwer KW, Zonneveld MI, De Wever O, Vandesompele J, Hendrix A. EV-TRACK Consortium, et al. Among authors: anckaert j. Nat Methods. 2017 Feb 28;14(3):228-232. doi: 10.1038/nmeth.4185. Nat Methods. 2017. PMID: 28245209
Zipper plot: visualizing transcriptional activity of genomic regions.
Avila Cobos F, Anckaert J, Volders PJ, Everaert C, Rombaut D, Vandesompele J, De Preter K, Mestdagh P. Avila Cobos F, et al. Among authors: anckaert j. BMC Bioinformatics. 2017 May 2;18(1):231. doi: 10.1186/s12859-017-1651-7. BMC Bioinformatics. 2017. PMID: 28464823 Free PMC article.
LNCipedia 5: towards a reference set of human long non-coding RNAs.
Volders PJ, Anckaert J, Verheggen K, Nuytens J, Martens L, Mestdagh P, Vandesompele J. Volders PJ, et al. Among authors: anckaert j. Nucleic Acids Res. 2019 Jan 8;47(D1):D135-D139. doi: 10.1093/nar/gky1031. Nucleic Acids Res. 2019. PMID: 30371849 Free PMC article.
SMARTer single cell total RNA sequencing.
Verboom K, Everaert C, Bolduc N, Livak KJ, Yigit N, Rombaut D, Anckaert J, Lee S, Venø MT, Kjems J, Speleman F, Mestdagh P, Vandesompele J. Verboom K, et al. Among authors: anckaert j. Nucleic Acids Res. 2019 Sep 19;47(16):e93. doi: 10.1093/nar/gkz535. Nucleic Acids Res. 2019. PMID: 31216024 Free PMC article.
Charting Extracellular Transcriptomes in The Human Biofluid RNA Atlas.
Hulstaert E, Morlion A, Avila Cobos F, Verniers K, Nuytens J, Vanden Eynde E, Yigit N, Anckaert J, Geerts A, Hindryckx P, Jacques P, Brusselle G, Bracke KR, Maes T, Malfait T, Derveaux T, Ninclaus V, Van Cauwenbergh C, Roelens K, Roets E, Hemelsoet D, Tilleman K, Brochez L, Kuersten S, Simon LM, Karg S, Kautzky-Willers A, Leutner M, Nöhammer C, Slaby O, Prins RW, Koster J, Lefever S, Schroth GP, Vandesompele J, Mestdagh P. Hulstaert E, et al. Among authors: anckaert j. Cell Rep. 2020 Dec 29;33(13):108552. doi: 10.1016/j.celrep.2020.108552. Cell Rep. 2020. PMID: 33378673 Free article.
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