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Patient health records and whole viral genomes from an early SARS-CoV-2 outbreak in a Quebec hospital reveal features associated with favorable outcomes.
Paré B, Rozendaal M, Morin S, Kaufmann L, Simpson SM, Poujol R, Mostefai F, Grenier JC, Xing H, Sanchez M, Yechouron A, Racette R, Hussin JG, Wolf G, Pavlov I, Smith MA. Paré B, et al. Among authors: wolf g. PLoS One. 2021 Dec 2;16(12):e0260714. doi: 10.1371/journal.pone.0260714. eCollection 2021. PLoS One. 2021. PMID: 34855869 Free PMC article.
Genomic epidemiology and associated clinical outcomes of a SARS-CoV-2 outbreak in a general adult hospital in Quebec.
Paré B, Rozendaal M, Morin S, Poujol R, Mostefai F, Grenier JC, Kaufmann L, Xing H, Sanchez M, Yechouron A, Racette R, Hussin J, Wolf G, Pavlov I, Smith MA. Paré B, et al. Among authors: wolf g. medRxiv [Preprint]. 2021 Jun 1:2021.05.29.21257760. doi: 10.1101/2021.05.29.21257760. medRxiv. 2021. PMID: 34100030 Free PMC article. Updated. Preprint.
Multiscale PHATE identifies multimodal signatures of COVID-19.
Kuchroo M, Huang J, Wong P, Grenier JC, Shung D, Tong A, Lucas C, Klein J, Burkhardt DB, Gigante S, Godavarthi A, Rieck B, Israelow B, Simonov M, Mao T, Oh JE, Silva J, Takahashi T, Odio CD, Casanovas-Massana A, Fournier J; Yale IMPACT Team; Farhadian S, Dela Cruz CS, Ko AI, Hirn MJ, Wilson FP, Hussin JG, Wolf G, Iwasaki A, Krishnaswamy S. Kuchroo M, et al. Among authors: wolf g. Nat Biotechnol. 2022 May;40(5):681-691. doi: 10.1038/s41587-021-01186-x. Epub 2022 Feb 28. Nat Biotechnol. 2022. PMID: 35228707 Free PMC article.
Population Genomics Approaches for Genetic Characterization of SARS-CoV-2 Lineages.
Mostefai F, Gamache I, N'Guessan A, Pelletier J, Huang J, Murall CL, Pesaranghader A, Gaonac'h-Lovejoy V, Hamelin DJ, Poujol R, Grenier JC, Smith M, Caron E, Craig M, Wolf G, Krishnaswamy S, Shapiro BJ, Hussin JG. Mostefai F, et al. Among authors: wolf g. Front Med (Lausanne). 2022 Feb 21;9:826746. doi: 10.3389/fmed.2022.826746. eCollection 2022. Front Med (Lausanne). 2022. PMID: 35265640 Free PMC article.
Sustained IFN signaling is associated with delayed development of SARS-CoV-2-specific immunity.
Brunet-Ratnasingham E, Morin S, Randolph HE, Labrecque M, Bélair J, Lima-Barbosa R, Pagliuzza A, Marchitto L, Hultström M, Niessl J, Cloutier R, Sreng Flores AM, Brassard N, Benlarbi M, Prévost J, Ding S, Anand SP, Sannier G, Marks A, Wågsäter D, Bareke E, Zeberg H, Lipcsey M, Frithiof R, Larsson A, Zhou S, Nakanishi T, Morrison D, Vezina D, Bourassa C, Gendron-Lepage G, Medjahed H, Point F, Richard J, Larochelle C, Prat A, Cunningham JL, Arbour N, Durand M, Richards JB, Moon K, Chomont N, Finzi A, Tétreault M, Barreiro L, Wolf G, Kaufmann DE. Brunet-Ratnasingham E, et al. Among authors: wolf g. Nat Commun. 2024 May 16;15(1):4177. doi: 10.1038/s41467-024-48556-y. Nat Commun. 2024. PMID: 38755196 Free article.
Gaining Biological Insights through Supervised Data Visualization.
Rhodes JS, Aumon A, Morin S, Girard M, Larochelle C, Brunet-Ratnasingham E, Pagliuzza A, Marchitto L, Zhang W, Cutler A, Grand'Maison F, Zhou A, Finzi A, Chomont N, Kaufmann DE, Zandee S, Prat A, Wolf G, Moon KR. Rhodes JS, et al. Among authors: wolf g. bioRxiv [Preprint]. 2024 Jan 21:2023.11.22.568384. doi: 10.1101/2023.11.22.568384. bioRxiv. 2024. PMID: 38293135 Free PMC article. Preprint.
Quantifying the effect of experimental perturbations at single-cell resolution.
Burkhardt DB, Stanley JS 3rd, Tong A, Perdigoto AL, Gigante SA, Herold KC, Wolf G, Giraldez AJ, van Dijk D, Krishnaswamy S. Burkhardt DB, et al. Among authors: wolf g. Nat Biotechnol. 2021 May;39(5):619-629. doi: 10.1038/s41587-020-00803-5. Epub 2021 Feb 8. Nat Biotechnol. 2021. PMID: 33558698 Free PMC article.
GEOMETRIC SCATTERING ATTENTION NETWORKS.
Min Y, Wenkel F, Wolf G. Min Y, et al. Among authors: wolf g. Proc IEEE Int Conf Acoust Speech Signal Process. 2021 Jun;2021:8518-8522. doi: 10.1109/icassp39728.2021.9414557. Epub 2021 May 13. Proc IEEE Int Conf Acoust Speech Signal Process. 2021. PMID: 34849105 Free PMC article.
Interpretable Neuron Structuring with Graph Spectral Regularization.
Tong A, van Dijk D, Stanley JS 3rd, Amodio M, Yim K, Muhle R, Noonan J, Wolf G, Krishnaswamy S. Tong A, et al. Among authors: wolf g. Adv Intell Data Anal. 2020 Apr;12080:509-521. doi: 10.1007/978-3-030-44584-3_40. Epub 2020 Apr 22. Adv Intell Data Anal. 2020. PMID: 34131660 Free PMC article.
2,553 results