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GranatumX: A Community-engaging, Modularized, and Flexible Webtool for Single-cell Data Analysis.
Genomics Proteomics Bioinformatics. 2021 Jun;19(3):452-460. doi: 10.1016/j.gpb.2021.07.005. Epub 2021 Dec 30.
Genomics Proteomics Bioinformatics. 2021.
PMID: 34973417
Free PMC article.
Granatum: a graphical single-cell RNA-Seq analysis pipeline for genomics scientists.
Zhu X, Wolfgruber TK, Tasato A, Arisdakessian C, Garmire DG, Garmire LX.
Zhu X, et al. Among authors: arisdakessian c.
Genome Med. 2017 Dec 5;9(1):108. doi: 10.1186/s13073-017-0492-3.
Genome Med. 2017.
PMID: 29202807
Free PMC article.
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DeepImpute: an accurate, fast, and scalable deep neural network method to impute single-cell RNA-seq data.
Arisdakessian C, Poirion O, Yunits B, Zhu X, Garmire LX.
Arisdakessian C, et al.
Genome Biol. 2019 Oct 18;20(1):211. doi: 10.1186/s13059-019-1837-6.
Genome Biol. 2019.
PMID: 31627739
Free PMC article.
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Evaluation of STAR and Kallisto on Single Cell RNA-Seq Data Alignment.
Du Y, Huang Q, Arisdakessian C, Garmire LX.
Du Y, et al. Among authors: arisdakessian c.
G3 (Bethesda). 2020 May 4;10(5):1775-1783. doi: 10.1534/g3.120.401160.
G3 (Bethesda). 2020.
PMID: 32220951
Free PMC article.
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CoCoNet: an efficient deep learning tool for viral metagenome binning.
Arisdakessian CG, Nigro OD, Steward GF, Poisson G, Belcaid M.
Arisdakessian CG, et al.
Bioinformatics. 2021 Sep 29;37(18):2803-2810. doi: 10.1093/bioinformatics/btab213.
Bioinformatics. 2021.
PMID: 33822891
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The amphibian microbiome exhibits poor resilience following pathogen-induced disturbance.
Jani AJ, Bushell J, Arisdakessian CG, Belcaid M, Boiano DM, Brown C, Knapp RA.
Jani AJ, et al. Among authors: arisdakessian cg.
ISME J. 2021 Jun;15(6):1628-1640. doi: 10.1038/s41396-020-00875-w. Epub 2021 Feb 9.
ISME J. 2021.
PMID: 33564111
Free PMC article.
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Geology and land use shape nitrogen and sulfur cycling groundwater microbial communities in Pacific Island aquifers.
Watson SJ, Arisdakessian C, Petelo M, Keliipuleole K, Tachera DK, Okuhata BK, Dulai H, Frank KL.
Watson SJ, et al. Among authors: arisdakessian c.
ISME Commun. 2023 Jun 7;3(1):58. doi: 10.1038/s43705-023-00261-5.
ISME Commun. 2023.
PMID: 37286627
Free PMC article.
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Groundwater microbial communities reflect geothermal activity on volcanic island.
Watson SJ, Arisdakessian C, Petelo M, Keliipuleole K, Tachera DK, Okuhata BK, Frank KL.
Watson SJ, et al. Among authors: arisdakessian c.
Geobiology. 2024 Mar-Apr;22(2):e12591. doi: 10.1111/gbi.12591.
Geobiology. 2024.
PMID: 38458993
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