Poirion O - Search Results

1

GranatumX: A Community-engaging, Modularized, and Flexible Webtool for Single-cell Data Analysis.

Garmire DG, Zhu X, Mantravadi A, Huang Q, Yunits B, Liu Y, Wolfgruber T, Poirion O, Zhao T, Arisdakessian C, Stanojevic S, Garmire LX. Garmire DG, et al. Among authors: poirion o. Genomics Proteomics Bioinformatics. 2021 Jun;19(3):452-460. doi: 10.1016/j.gpb.2021.07.005. Epub 2021 Dec 30. Genomics Proteomics Bioinformatics. 2021. PMID: 34973417 Free PMC article.

2

Human-gained heart enhancers are associated with species-specific cardiac attributes.

Destici E, Zhu F, Tran S, Preissl S, Farah EN, Zhang Y, Hou X, Poirion OB, Lee AY, Grinstein JD, Bloomekatz J, Kim HS, Hu R, Evans SM, Ren B, Benner C, Chi NC. Destici E, et al. Among authors: poirion ob. Nat Cardiovasc Res. 2022 Sep;1(9):830-843. doi: 10.1038/s44161-022-00124-7. Epub 2022 Sep 15. Nat Cardiovasc Res. 2022. PMID: 36817700 Free PMC article.

3

Single-Cell Transcriptomics Bioinformatics and Computational Challenges.

Poirion OB, Zhu X, Ching T, Garmire L. Poirion OB, et al. Front Genet. 2016 Sep 21;7:163. doi: 10.3389/fgene.2016.00163. eCollection 2016. Front Genet. 2016. PMID: 27708664 Free PMC article. Review.

4

Deep Learning-Based Multi-Omics Integration Robustly Predicts Survival in Liver Cancer.

Chaudhary K, Poirion OB, Lu L, Garmire LX. Chaudhary K, et al. Clin Cancer Res. 2018 Mar 15;24(6):1248-1259. doi: 10.1158/1078-0432.CCR-17-0853. Epub 2017 Oct 5. Clin Cancer Res. 2018. PMID: 28982688 Free PMC article.

5

Using single-cell multiple omics approaches to resolve tumor heterogeneity.

Ortega MA, Poirion O, Zhu X, Huang S, Wolfgruber TK, Sebra R, Garmire LX. Ortega MA, et al. Among authors: poirion o. Clin Transl Med. 2017 Dec 28;6(1):46. doi: 10.1186/s40169-017-0177-y. Clin Transl Med. 2017. PMID: 29285690 Free PMC article. Review.

6

Deep Learning data integration for better risk stratification models of bladder cancer.

Poirion OB, Chaudhary K, Garmire LX. Poirion OB, et al. AMIA Jt Summits Transl Sci Proc. 2018 May 18;2017:197-206. eCollection 2018. AMIA Jt Summits Transl Sci Proc. 2018. PMID: 29888072 Free PMC article.

7

Multimodal Meta-Analysis of 1,494 Hepatocellular Carcinoma Samples Reveals Significant Impact of Consensus Driver Genes on Phenotypes.

Chaudhary K, Poirion OB, Lu L, Huang S, Ching T, Garmire LX. Chaudhary K, et al. Clin Cancer Res. 2019 Jan 15;25(2):463-472. doi: 10.1158/1078-0432.CCR-18-0088. Epub 2018 Sep 21. Clin Cancer Res. 2019. PMID: 30242023 Free PMC article.

8

Using single nucleotide variations in single-cell RNA-seq to identify subpopulations and genotype-phenotype linkage.

Poirion O, Zhu X, Ching T, Garmire LX. Poirion O, et al. Nat Commun. 2018 Nov 20;9(1):4892. doi: 10.1038/s41467-018-07170-5. Nat Commun. 2018. PMID: 30459309 Free PMC article.

9

DeepImpute: an accurate, fast, and scalable deep neural network method to impute single-cell RNA-seq data.

Arisdakessian C, Poirion O, Yunits B, Zhu X, Garmire LX. Arisdakessian C, et al. Among authors: poirion o. Genome Biol. 2019 Oct 18;20(1):211. doi: 10.1186/s13059-019-1837-6. Genome Biol. 2019. PMID: 31627739 Free PMC article.

10

DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data.

Poirion OB, Jing Z, Chaudhary K, Huang S, Garmire LX. Poirion OB, et al. Genome Med. 2021 Jul 14;13(1):112. doi: 10.1186/s13073-021-00930-x. Genome Med. 2021. PMID: 34261540 Free PMC article.

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