Bussemaker HJ - Search Results

1

Transcription factor regulation of eQTL activity across individuals and tissues.

Flynn ED, Tsu AL, Kasela S, Kim-Hellmuth S, Aguet F, Ardlie KG, Bussemaker HJ, Mohammadi P, Lappalainen T. Flynn ED, et al. Among authors: bussemaker hj. PLoS Genet. 2022 Jan 31;18(1):e1009719. doi: 10.1371/journal.pgen.1009719. eCollection 2022 Jan. PLoS Genet. 2022. PMID: 35100260 Free PMC article.

2

Identifying the genetic determinants of transcription factor activity.

Lee E, Bussemaker HJ. Lee E, et al. Among authors: bussemaker hj. Mol Syst Biol. 2010 Sep 21;6:412. doi: 10.1038/msb.2010.64. Mol Syst Biol. 2010. PMID: 20865005 Free PMC article.

3

High-throughput identification of human SNPs affecting regulatory element activity.

van Arensbergen J, Pagie L, FitzPatrick VD, de Haas M, Baltissen MP, Comoglio F, van der Weide RH, Teunissen H, Võsa U, Franke L, de Wit E, Vermeulen M, Bussemaker HJ, van Steensel B. van Arensbergen J, et al. Among authors: bussemaker hj. Nat Genet. 2019 Jul;51(7):1160-1169. doi: 10.1038/s41588-019-0455-2. Epub 2019 Jun 28. Nat Genet. 2019. PMID: 31253979 Free PMC article.

4

Identifying genetic regulatory variants that affect transcription factor activity.

Li X, Lappalainen T, Bussemaker HJ. Li X, et al. Among authors: bussemaker hj. Cell Genom. 2023 Aug 18;3(9):100382. doi: 10.1016/j.xgen.2023.100382. eCollection 2023 Sep 13. Cell Genom. 2023. PMID: 37719147 Free PMC article.

5

Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.

Foat BC, Morozov AV, Bussemaker HJ. Foat BC, et al. Among authors: bussemaker hj. Bioinformatics. 2006 Jul 15;22(14):e141-9. doi: 10.1093/bioinformatics/btl223. Bioinformatics. 2006. PMID: 16873464

6

TransfactomeDB: a resource for exploring the nucleotide sequence specificity and condition-specific regulatory activity of trans-acting factors.

Foat BC, Tepper RG, Bussemaker HJ. Foat BC, et al. Among authors: bussemaker hj. Nucleic Acids Res. 2008 Jan;36(Database issue):D125-31. doi: 10.1093/nar/gkm828. Epub 2007 Oct 18. Nucleic Acids Res. 2008. PMID: 17947326 Free PMC article.

7

Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences.

Ward LD, Bussemaker HJ. Ward LD, et al. Among authors: bussemaker hj. Bioinformatics. 2008 Jul 1;24(13):i165-71. doi: 10.1093/bioinformatics/btn154. Bioinformatics. 2008. PMID: 18586710 Free PMC article.

8

Harnessing natural sequence variation to dissect posttranscriptional regulatory networks in yeast.

Fazlollahi M, Lee E, Muroff I, Lu XJ, Gomez-Alcala P, Causton HC, Bussemaker HJ. Fazlollahi M, et al. Among authors: bussemaker hj. G3 (Bethesda). 2014 Jun 17;4(8):1539-53. doi: 10.1534/g3.114.012039. G3 (Bethesda). 2014. PMID: 24938291 Free PMC article.

9

Quantitative modeling of transcription factor binding specificities using DNA shape.

Zhou T, Shen N, Yang L, Abe N, Horton J, Mann RS, Bussemaker HJ, Gordân R, Rohs R. Zhou T, et al. Among authors: bussemaker hj. Proc Natl Acad Sci U S A. 2015 Apr 14;112(15):4654-9. doi: 10.1073/pnas.1422023112. Epub 2015 Mar 9. Proc Natl Acad Sci U S A. 2015. PMID: 25775564 Free PMC article.

10

Identifying genetic modulators of the connectivity between transcription factors and their transcriptional targets.

Fazlollahi M, Muroff I, Lee E, Causton HC, Bussemaker HJ. Fazlollahi M, et al. Among authors: bussemaker hj. Proc Natl Acad Sci U S A. 2016 Mar 29;113(13):E1835-43. doi: 10.1073/pnas.1517140113. Epub 2016 Mar 10. Proc Natl Acad Sci U S A. 2016. PMID: 26966232 Free PMC article.

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