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Adaptive laboratory evolution in S. cerevisiae highlights role of transcription factors in fungal xenobiotic resistance.
Ottilie S, Luth MR, Hellemann E, Goldgof GM, Vigil E, Kumar P, Cheung AL, Song M, Godinez-Macias KP, Carolino K, Yang J, Lopez G, Abraham M, Tarsio M, LeBlanc E, Whitesell L, Schenken J, Gunawan F, Patel R, Smith J, Love MS, Williams RM, McNamara CW, Gerwick WH, Ideker T, Suzuki Y, Wirth DF, Lukens AK, Kane PM, Cowen LE, Durrant JD, Winzeler EA. Ottilie S, et al. Among authors: ideker t. Commun Biol. 2022 Feb 11;5(1):128. doi: 10.1038/s42003-022-03076-7. Commun Biol. 2022. PMID: 35149760 Free PMC article.
Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae.
Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hon GC, Myers CL, Parsons A, Friesen H, Oughtred R, Tong A, Stark C, Ho Y, Botstein D, Andrews B, Boone C, Troyanskya OG, Ideker T, Dolinski K, Batada NN, Tyers M. Reguly T, et al. Among authors: ideker t. J Biol. 2006;5(4):11. doi: 10.1186/jbiol36. Epub 2006 Jun 8. J Biol. 2006. PMID: 16762047 Free PMC article.
Typing tumors using pathways selected by somatic evolution.
Wang S, Ma J, Zhang W, Shen JP, Huang J, Peng J, Ideker T. Wang S, et al. Among authors: ideker t. Nat Commun. 2018 Oct 8;9(1):4159. doi: 10.1038/s41467-018-06464-y. Nat Commun. 2018. PMID: 30297789 Free PMC article.
De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences.
Vakirlis N, Acar O, Hsu B, Castilho Coelho N, Van Oss SB, Wacholder A, Medetgul-Ernar K, Bowman RW 2nd, Hines CP, Iannotta J, Parikh SB, McLysaght A, Camacho CJ, O'Donnell AF, Ideker T, Carvunis AR. Vakirlis N, et al. Among authors: ideker t. Nat Commun. 2020 Feb 7;11(1):781. doi: 10.1038/s41467-020-14500-z. Nat Commun. 2020. PMID: 32034123 Free PMC article.
Genome-Wide Dynamic Evaluation of the UV-Induced DNA Damage Response.
Silva E, Michaca M, Munson B, Bean GJ, Jaeger PA, Licon K, Winzeler EA, Ideker T. Silva E, et al. Among authors: ideker t. G3 (Bethesda). 2020 Sep 2;10(9):2981-2988. doi: 10.1534/g3.120.401417. G3 (Bethesda). 2020. PMID: 32732306 Free PMC article.
284 results