Olson AJ - Search Results

1

Experimental demonstration and pan-structurome prediction of climate-associated riboSNitches in Arabidopsis.

Ferrero-Serrano Á, Sylvia MM, Forstmeier PC, Olson AJ, Ware D, Bevilacqua PC, Assmann SM. Ferrero-Serrano Á, et al. Among authors: olson aj. Genome Biol. 2022 Apr 19;23(1):101. doi: 10.1186/s13059-022-02656-4. Genome Biol. 2022. PMID: 35440059 Free PMC article.

2

Ranked choice voting for representative transcripts with TRaCE.

Olson AJ, Ware D. Olson AJ, et al. Bioinformatics. 2021 Dec 22;38(1):261-264. doi: 10.1093/bioinformatics/btab542. Bioinformatics. 2021. PMID: 34297055 Free PMC article.

3

Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes.

Law M, Childs KL, Campbell MS, Stein JC, Olson AJ, Holt C, Panchy N, Lei J, Jiao D, Andorf CM, Lawrence CJ, Ware D, Shiu SH, Sun Y, Jiang N, Yandell M. Law M, et al. Among authors: olson aj. Plant Physiol. 2015 Jan;167(1):25-39. doi: 10.1104/pp.114.245027. Epub 2014 Nov 10. Plant Physiol. 2015. PMID: 25384563 Free PMC article.

4

Features of 5'-splice-site efficiency derived from disease-causing mutations and comparative genomics.

Roca X, Olson AJ, Rao AR, Enerly E, Kristensen VN, Børresen-Dale AL, Andresen BS, Krainer AR, Sachidanandam R. Roca X, et al. Among authors: olson aj. Genome Res. 2008 Jan;18(1):77-87. doi: 10.1101/gr.6859308. Epub 2007 Nov 21. Genome Res. 2008. PMID: 18032726 Free PMC article.

5

GeneSeer: a sage for gene names and genomic resources.

Olson AJ, Tully T, Sachidanandam R. Olson AJ, et al. BMC Genomics. 2005 Sep 21;6:134. doi: 10.1186/1471-2164-6-134. BMC Genomics. 2005. PMID: 16176584 Free PMC article.

6

Genome wide ChIP-chip analyses reveal important roles for CTCF in Drosophila genome organization.

Smith ST, Wickramasinghe P, Olson A, Loukinov D, Lin L, Deng J, Xiong Y, Rux J, Sachidanandam R, Sun H, Lobanenkov V, Zhou J. Smith ST, et al. Dev Biol. 2009 Apr 15;328(2):518-28. doi: 10.1016/j.ydbio.2008.12.039. Epub 2009 Jan 8. Dev Biol. 2009. PMID: 19210964 Free PMC article.

7

NovoGraph: Human genome graph construction from multiple long-read de novo assemblies.

Biederstedt E, Oliver JC, Hansen NF, Jajoo A, Dunn N, Olson A, Busby B, Dilthey AT. Biederstedt E, et al. F1000Res. 2018 Sep 3;7:1391. doi: 10.12688/f1000research.15895.2. eCollection 2018. F1000Res. 2018. PMID: 30613392 Free PMC article.

8

Analysis of large-scale sequencing of small RNAs.

Olson AJ, Brennecke J, Aravin AA, Hannon GJ, Sachidanandam R. Olson AJ, et al. Pac Symp Biocomput. 2008:126-36. doi: 10.1142/9789812776136_0014. Pac Symp Biocomput. 2008. PMID: 18229681 Free article.

9

RNAi Codex: a portal/database for short-hairpin RNA (shRNA) gene-silencing constructs.

Olson A, Sheth N, Lee JS, Hannon G, Sachidanandam R. Olson A, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D153-7. doi: 10.1093/nar/gkj051. Nucleic Acids Res. 2006. PMID: 16381835 Free PMC article.

10

Identification of clickable HIV-1 capsid-targeting probes for viral replication inhibition.

McFadden WM, Casey-Moore MC, Bare GAL, Kirby KA, Wen X, Li G, Wang H, Slack RL, Snyder AA, Lorson ZC, Kaufman IL, Cilento ME, Tedbury PR, Gembicky M, Olson AJ, Torbett BE, Sharpless KB, Sarafianos SG. McFadden WM, et al. Among authors: olson aj. Cell Chem Biol. 2024 Mar 21;31(3):477-486.e7. doi: 10.1016/j.chembiol.2024.02.012. Cell Chem Biol. 2024. PMID: 38518746

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