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phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets.
De Maio N, Boulton W, Weilguny L, Walker CR, Turakhia Y, Corbett-Detig R, Goldman N. De Maio N, et al. Among authors: turakhia y. PLoS Comput Biol. 2022 Apr 29;18(4):e1010056. doi: 10.1371/journal.pcbi.1010056. eCollection 2022 Apr. PLoS Comput Biol. 2022. PMID: 35486906 Free PMC article.
Stability of SARS-CoV-2 phylogenies.
Turakhia Y, De Maio N, Thornlow B, Gozashti L, Lanfear R, Walker CR, Hinrichs AS, Fernandes JD, Borges R, Slodkowicz G, Weilguny L, Haussler D, Goldman N, Corbett-Detig R. Turakhia Y, et al. PLoS Genet. 2020 Nov 18;16(11):e1009175. doi: 10.1371/journal.pgen.1009175. eCollection 2020 Nov. PLoS Genet. 2020. PMID: 33206635 Free PMC article.
Mutation rates and selection on synonymous mutations in SARS-CoV-2.
De Maio N, Walker CR, Turakhia Y, Lanfear R, Corbett-Detig R, Goldman N. De Maio N, et al. Among authors: turakhia y. bioRxiv [Preprint]. 2021 Jan 14:2021.01.14.426705. doi: 10.1101/2021.01.14.426705. bioRxiv. 2021. PMID: 33469589 Free PMC article. Updated. Preprint.
Mutation Rates and Selection on Synonymous Mutations in SARS-CoV-2.
De Maio N, Walker CR, Turakhia Y, Lanfear R, Corbett-Detig R, Goldman N. De Maio N, et al. Among authors: turakhia y. Genome Biol Evol. 2021 May 7;13(5):evab087. doi: 10.1093/gbe/evab087. Genome Biol Evol. 2021. PMID: 33895815 Free PMC article.
Pandemic-scale phylogenomics reveals the SARS-CoV-2 recombination landscape.
Turakhia Y, Thornlow B, Hinrichs A, McBroome J, Ayala N, Ye C, Smith K, De Maio N, Haussler D, Lanfear R, Corbett-Detig R. Turakhia Y, et al. Nature. 2022 Sep;609(7929):994-997. doi: 10.1038/s41586-022-05189-9. Epub 2022 Aug 11. Nature. 2022. PMID: 35952714 Free PMC article.
29 results