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BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Shaikh B, Smith LP, Vasilescu D, Marupilla G, Wilson M, Agmon E, Agnew H, Andrews SS, Anwar A, Beber ME, Bergmann FT, Brooks D, Brusch L, Calzone L, Choi K, Cooper J, Detloff J, Drawert B, Dumontier M, Ermentrout GB, Faeder JR, Freiburger AP, Fröhlich F, Funahashi A, Garny A, Gennari JH, Gleeson P, Goelzer A, Haiman Z, Hasenauer J, Hellerstein JL, Hermjakob H, Hoops S, Ison JC, Jahn D, Jakubowski HV, Jordan R, Kalaš M, König M, Liebermeister W, Sheriff RSM, Mandal S, McDougal R, Medley JK, Mendes P, Müller R, Myers CJ, Naldi A, Nguyen TVN, Nickerson DP, Olivier BG, Patoliya D, Paulevé L, Petzold LR, Priya A, Rampadarath AK, Rohwer JM, Saglam AS, Singh D, Sinha A, Snoep J, Sorby H, Spangler R, Starruß J, Thomas PJ, van Niekerk D, Weindl D, Zhang F, Zhukova A, Goldberg AP, Schaff JC, Blinov ML, Sauro HM, Moraru II, Karr JR. Shaikh B, et al. Among authors: vasilescu d. Nucleic Acids Res. 2022 Jul 5;50(W1):W108-W114. doi: 10.1093/nar/gkac331. Nucleic Acids Res. 2022. PMID: 35524558 Free PMC article.
Rule-based modeling with Virtual Cell.
Schaff JC, Vasilescu D, Moraru II, Loew LM, Blinov ML. Schaff JC, et al. Among authors: vasilescu d. Bioinformatics. 2016 Sep 15;32(18):2880-2. doi: 10.1093/bioinformatics/btw353. Epub 2016 Jun 9. Bioinformatics. 2016. PMID: 27497444 Free PMC article.
Pathway Commons at virtual cell: use of pathway data for mathematical modeling.
Blinov ML, Schaff JC, Ruebenacker O, Wei X, Vasilescu D, Gao F, Morgan F, Ye L, Lakshminarayana A, Moraru II, Loew LM. Blinov ML, et al. Among authors: vasilescu d. Bioinformatics. 2014 Jan 15;30(2):292-4. doi: 10.1093/bioinformatics/btt660. Epub 2013 Nov 22. Bioinformatics. 2014. PMID: 24273241 Free PMC article.
Compartmental and Spatial Rule-Based Modeling with Virtual Cell.
Blinov ML, Schaff JC, Vasilescu D, Moraru II, Bloom JE, Loew LM. Blinov ML, et al. Among authors: vasilescu d. Biophys J. 2017 Oct 3;113(7):1365-1372. doi: 10.1016/j.bpj.2017.08.022. Biophys J. 2017. PMID: 28978431 Free PMC article.
Airbag injuries of the hand: a case-series and literature review.
Mahmoud AZB, Alhusain AM, Alkhadhrawi MNH, Vasilescu DC. Mahmoud AZB, et al. Among authors: vasilescu dc. J Surg Case Rep. 2024 Feb 13;2024(2):rjae052. doi: 10.1093/jscr/rjae052. eCollection 2024 Feb. J Surg Case Rep. 2024. PMID: 38357384 Free PMC article.
Development of a unilateral porcine emphysema model induced by porcine pancreatic elastase.
Tajima Y, Seow CY, Dong SJ, Tsutsui M, Cheung CY, Welch I, Mowbray L, Imlach B, Hildebrandt R, Apperloo K, Ryomoto B, Goodacre E, Myrdal C, Machan L, Wolff K, Elizur E, Vasilescu DM, Sin DD. Tajima Y, et al. Among authors: vasilescu dm. J Appl Physiol (1985). 2023 Nov 1;135(5):1001-1011. doi: 10.1152/japplphysiol.00801.2022. Epub 2023 Sep 28. J Appl Physiol (1985). 2023. PMID: 37767558
147 results