Fondrie WE - Search Results

1

Building Spectral Libraries from Narrow-Window Data-Independent Acquisition Mass Spectrometry Data.

Heil LR, Fondrie WE, McGann CD, Federation AJ, Noble WS, MacCoss MJ, Keich U. Heil LR, et al. Among authors: fondrie we. J Proteome Res. 2022 Jun 3;21(6):1382-1391. doi: 10.1021/acs.jproteome.1c00895. Epub 2022 May 12. J Proteome Res. 2022. PMID: 35549345 Free PMC article.

2

Machine Learning Strategy That Leverages Large Data sets to Boost Statistical Power in Small-Scale Experiments.

Fondrie WE, Noble WS. Fondrie WE, et al. J Proteome Res. 2020 Mar 6;19(3):1267-1274. doi: 10.1021/acs.jproteome.9b00780. Epub 2020 Feb 17. J Proteome Res. 2020. PMID: 32009418 Free PMC article.

3

mokapot: Fast and Flexible Semisupervised Learning for Peptide Detection.

Fondrie WE, Noble WS. Fondrie WE, et al. J Proteome Res. 2021 Apr 2;20(4):1966-1971. doi: 10.1021/acs.jproteome.0c01010. Epub 2021 Feb 17. J Proteome Res. 2021. PMID: 33596079 Free PMC article.

4

Subzero, saline incubations of Colwellia psychrerythraea reveal strategies and biomarkers for sustained life in extreme icy environments.

Mudge MC, Nunn BL, Firth E, Ewert M, Hales K, Fondrie WE, Noble WS, Toner J, Light B, Junge KA. Mudge MC, et al. Among authors: fondrie we. Environ Microbiol. 2021 Jul;23(7):3840-3866. doi: 10.1111/1462-2920.15485. Epub 2021 Apr 12. Environ Microbiol. 2021. PMID: 33760340 Free PMC article.

5

ppx: Programmatic Access to Proteomics Data Repositories.

Fondrie WE, Bittremieux W, Noble WS. Fondrie WE, et al. J Proteome Res. 2021 Sep 3;20(9):4621-4624. doi: 10.1021/acs.jproteome.1c00454. Epub 2021 Aug 3. J Proteome Res. 2021. PMID: 34342226 Free PMC article.

6

Tandem Mass Spectrometry-Based Amyloid Typing Using Manual Microdissection and Open-Source Data Processing.

Phipps WS, Smith KD, Yang HY, Henderson CM, Pflaum H, Lerch ML, Fondrie WE, Emrick MA, Wu CC, MacCoss MJ, Noble WS, Hoofnagle AN. Phipps WS, et al. Among authors: fondrie we. Am J Clin Pathol. 2022 May 4;157(5):748-757. doi: 10.1093/ajcp/aqab185. Am J Clin Pathol. 2022. PMID: 35512256 Free PMC article.

7

The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data.

Kertesz-Farkas A, Nii Adoquaye Acquaye FL, Bhimani K, Eng JK, Fondrie WE, Grant C, Hoopmann MR, Lin A, Lu YY, Moritz RL, MacCoss MJ, Noble WS. Kertesz-Farkas A, et al. Among authors: fondrie we. J Proteome Res. 2023 Feb 3;22(2):561-569. doi: 10.1021/acs.jproteome.2c00615. Epub 2023 Jan 4. J Proteome Res. 2023. PMID: 36598107 Free PMC article.

8

Semisupervised Machine Learning for Sensitive Open Modification Spectral Library Searching.

Arab I, Fondrie WE, Laukens K, Bittremieux W. Arab I, et al. Among authors: fondrie we. J Proteome Res. 2023 Feb 3;22(2):585-593. doi: 10.1021/acs.jproteome.2c00616. Epub 2023 Jan 23. J Proteome Res. 2023. PMID: 36688569

9

nf-encyclopedia: A Cloud-Ready Pipeline for Chromatogram Library Data-Independent Acquisition Proteomics Workflows.

Allen C, Meinl R, Paez JS, Searle BC, Just S, Pino LK, Fondrie WE. Allen C, et al. Among authors: fondrie we. J Proteome Res. 2023 Aug 4;22(8):2743-2749. doi: 10.1021/acs.jproteome.2c00613. Epub 2023 Jul 7. J Proteome Res. 2023. PMID: 37417926

10

Evaluating Proteomics Imputation Methods with Improved Criteria.

Harris L, Fondrie WE, Oh S, Noble WS. Harris L, et al. Among authors: fondrie we. J Proteome Res. 2023 Nov 3;22(11):3427-3438. doi: 10.1021/acs.jproteome.3c00205. Epub 2023 Oct 20. J Proteome Res. 2023. PMID: 37861703 Free PMC article.

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