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Safety and efficacy of faecal microbiota transplantation by Anaerobic Cultivated Human Intestinal Microbiome (ACHIM) in patients with systemic sclerosis: study protocol for the randomised controlled phase II ReSScue trial.
Hoffmann-Vold AM, Fretheim HH, Sarna VK, Barua I, Carstens MN, Distler O, Khanna D, Volkmann ER, Midtvedt Ø, Didriksen H, Dhainaut A, Halse AK, Bakland G, Pesonen M, Olsen I, Molberg Ø. Hoffmann-Vold AM, et al. Among authors: pesonen m. BMJ Open. 2021 Jun 24;11(6):e048541. doi: 10.1136/bmjopen-2020-048541. BMJ Open. 2021. PMID: 34168032 Free PMC article.
Modulation of multidrug-resistant clone success in Escherichia coli populations: a longitudinal, multi-country, genomic and antibiotic usage cohort study.
Pöntinen AK, Gladstone RA, Pesonen H, Pesonen M, Cléon F, Parcell BJ, Kallonen T, Simonsen GS, Croucher NJ, McNally A, Parkhill J, Johnsen PJ, Samuelsen Ø, Corander J. Pöntinen AK, et al. Among authors: pesonen m. Lancet Microbe. 2024 Feb;5(2):e142-e150. doi: 10.1016/S2666-5247(23)00292-6. Epub 2024 Jan 11. Lancet Microbe. 2024. PMID: 38219757 Free article.
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis.
Skwark MJ, Croucher NJ, Puranen S, Chewapreecha C, Pesonen M, Xu YY, Turner P, Harris SR, Beres SB, Musser JM, Parkhill J, Bentley SD, Aurell E, Corander J. Skwark MJ, et al. Among authors: pesonen m. PLoS Genet. 2017 Feb 16;13(2):e1006508. doi: 10.1371/journal.pgen.1006508. eCollection 2017 Feb. PLoS Genet. 2017. PMID: 28207813 Free PMC article.
SuperDCA for genome-wide epistasis analysis.
Puranen S, Pesonen M, Pensar J, Xu YY, Lees JA, Bentley SD, Croucher NJ, Corander J. Puranen S, et al. Among authors: pesonen m. Microb Genom. 2018 Jun;4(6):e000184. doi: 10.1099/mgen.0.000184. Epub 2018 May 29. Microb Genom. 2018. PMID: 29813016 Free PMC article.
Integrated analysis of population genomics, transcriptomics and virulence provides novel insights into Streptococcus pyogenes pathogenesis.
Kachroo P, Eraso JM, Beres SB, Olsen RJ, Zhu L, Nasser W, Bernard PE, Cantu CC, Saavedra MO, Arredondo MJ, Strope B, Do H, Kumaraswami M, Vuopio J, Gröndahl-Yli-Hannuksela K, Kristinsson KG, Gottfredsson M, Pesonen M, Pensar J, Davenport ER, Clark AG, Corander J, Caugant DA, Gaini S, Magnussen MD, Kubiak SL, Nguyen HAT, Long SW, Porter AR, DeLeo FR, Musser JM. Kachroo P, et al. Among authors: pesonen m. Nat Genet. 2019 Mar;51(3):548-559. doi: 10.1038/s41588-018-0343-1. Epub 2019 Feb 18. Nat Genet. 2019. PMID: 30778225 Free PMC article.
Genome-wide epistasis and co-selection study using mutual information.
Pensar J, Puranen S, Arnold B, MacAlasdair N, Kuronen J, Tonkin-Hill G, Pesonen M, Xu Y, Sipola A, Sánchez-Busó L, Lees JA, Chewapreecha C, Bentley SD, Harris SR, Parkhill J, Croucher NJ, Corander J. Pensar J, et al. Among authors: pesonen m. Nucleic Acids Res. 2019 Oct 10;47(18):e112. doi: 10.1093/nar/gkz656. Nucleic Acids Res. 2019. PMID: 31361894 Free PMC article.
Strain Variability of Listeria monocytogenes under NaCl Stress Elucidated by a High-Throughput Microbial Growth Data Assembly and Analysis Protocol.
Aalto-Araneda M, Pöntinen A, Pesonen M, Corander J, Markkula A, Tasara T, Stephan R, Korkeala H. Aalto-Araneda M, et al. Among authors: pesonen m. Appl Environ Microbiol. 2020 Mar 2;86(6):e02378-19. doi: 10.1128/AEM.02378-19. Print 2020 Mar 2. Appl Environ Microbiol. 2020. PMID: 31900307 Free PMC article.
150 results