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Editorial: Microbiome and Machine Learning.
Moreno-Indias I, Zomer AL, Gómez-Cabrero D, Claesson MJ. Moreno-Indias I, et al. Among authors: zomer al. Front Microbiol. 2022 Jul 5;13:964921. doi: 10.3389/fmicb.2022.964921. eCollection 2022. Front Microbiol. 2022. PMID: 35865916 Free PMC article. No abstract available.
Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor.
O'Connell Motherway M, Zomer A, Leahy SC, Reunanen J, Bottacini F, Claesson MJ, O'Brien F, Flynn K, Casey PG, Munoz JA, Kearney B, Houston AM, O'Mahony C, Higgins DG, Shanahan F, Palva A, de Vos WM, Fitzgerald GF, Ventura M, O'Toole PW, van Sinderen D. O'Connell Motherway M, et al. Proc Natl Acad Sci U S A. 2011 Jul 5;108(27):11217-22. doi: 10.1073/pnas.1105380108. Epub 2011 Jun 20. Proc Natl Acad Sci U S A. 2011. PMID: 21690406 Free PMC article.
Colonic microbiota is associated with inflammation and host epigenomic alterations in inflammatory bowel disease.
Ryan FJ, Ahern AM, Fitzgerald RS, Laserna-Mendieta EJ, Power EM, Clooney AG, O'Donoghue KW, McMurdie PJ, Iwai S, Crits-Christoph A, Sheehan D, Moran C, Flemer B, Zomer AL, Fanning A, O'Callaghan J, Walton J, Temko A, Stack W, Jackson L, Joyce SA, Melgar S, DeSantis TZ, Bell JT, Shanahan F, Claesson MJ. Ryan FJ, et al. Among authors: zomer al. Nat Commun. 2020 Mar 23;11(1):1512. doi: 10.1038/s41467-020-15342-5. Nat Commun. 2020. PMID: 32251296 Free PMC article.
Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions.
Moreno-Indias I, Lahti L, Nedyalkova M, Elbere I, Roshchupkin G, Adilovic M, Aydemir O, Bakir-Gungor B, Santa Pau EC, D'Elia D, Desai MS, Falquet L, Gundogdu A, Hron K, Klammsteiner T, Lopes MB, Marcos-Zambrano LJ, Marques C, Mason M, May P, Pašić L, Pio G, Pongor S, Promponas VJ, Przymus P, Saez-Rodriguez J, Sampri A, Shigdel R, Stres B, Suharoschi R, Truu J, Truică CO, Vilne B, Vlachakis D, Yilmaz E, Zeller G, Zomer AL, Gómez-Cabrero D, Claesson MJ. Moreno-Indias I, et al. Among authors: zomer al. Front Microbiol. 2021 Feb 22;12:635781. doi: 10.3389/fmicb.2021.635781. eCollection 2021. Front Microbiol. 2021. PMID: 33692771 Free PMC article.
The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity.
Ventura M, Turroni F, Zomer A, Foroni E, Giubellini V, Bottacini F, Canchaya C, Claesson MJ, He F, Mantzourani M, Mulas L, Ferrarini A, Gao B, Delledonne M, Henrissat B, Coutinho P, Oggioni M, Gupta RS, Zhang Z, Beighton D, Fitzgerald GF, O'Toole PW, van Sinderen D. Ventura M, et al. PLoS Genet. 2009 Dec;5(12):e1000785. doi: 10.1371/journal.pgen.1000785. Epub 2009 Dec 24. PLoS Genet. 2009. PMID: 20041198 Free PMC article.
118 results