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Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems.
Richter DJ, Watteaux R, Vannier T, Leconte J, Frémont P, Reygondeau G, Maillet N, Henry N, Benoit G, Da Silva O, Delmont TO, Fernàndez-Guerra A, Suweis S, Narci R, Berney C, Eveillard D, Gavory F, Guidi L, Labadie K, Mahieu E, Poulain J, Romac S, Roux S, Dimier C, Kandels S, Picheral M, Searson S; Tara Oceans Coordinators; Pesant S, Aury JM, Brum JR, Lemaitre C, Pelletier E, Bork P, Sunagawa S, Lombard F, Karp-Boss L, Bowler C, Sullivan MB, Karsenti E, Mariadassou M, Probert I, Peterlongo P, Wincker P, de Vargas C, Ribera d'Alcalà M, Iudicone D, Jaillon O. Richter DJ, et al. Among authors: peterlongo p. Elife. 2022 Aug 3;11:e78129. doi: 10.7554/eLife.78129. Elife. 2022. PMID: 35920817 Free PMC article.
Compareads: comparing huge metagenomic experiments.
Maillet N, Lemaitre C, Chikhi R, Lavenier D, Peterlongo P. Maillet N, et al. Among authors: peterlongo p. BMC Bioinformatics. 2012;13 Suppl 19(Suppl 19):S10. doi: 10.1186/1471-2105-13-S19-S10. Epub 2012 Dec 19. BMC Bioinformatics. 2012. PMID: 23282463 Free PMC article.
GATB: Genome Assembly & Analysis Tool Box.
Drezen E, Rizk G, Chikhi R, Deltel C, Lemaitre C, Peterlongo P, Lavenier D. Drezen E, et al. Among authors: peterlongo p. Bioinformatics. 2014 Oct 15;30(20):2959-61. doi: 10.1093/bioinformatics/btu406. Epub 2014 Jul 1. Bioinformatics. 2014. PMID: 24990603 Free PMC article.
Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii.
Loux V, Mariadassou M, Almeida S, Chiapello H, Hammani A, Buratti J, Gendrault A, Barbe V, Aury JM, Deutsch SM, Parayre S, Madec MN, Chuat V, Jan G, Peterlongo P, Azevedo V, Le Loir Y, Falentin H. Loux V, et al. Among authors: peterlongo p. BMC Genomics. 2015 Apr 15;16(1):296. doi: 10.1186/s12864-015-1467-7. BMC Genomics. 2015. PMID: 25886522 Free PMC article.
De novo clustering of long reads by gene from transcriptomics data.
Marchet C, Lecompte L, Silva CD, Cruaud C, Aury JM, Nicolas J, Peterlongo P. Marchet C, et al. Among authors: peterlongo p. Nucleic Acids Res. 2019 Jan 10;47(1):e2. doi: 10.1093/nar/gky834. Nucleic Acids Res. 2019. PMID: 30260405 Free PMC article.
SVJedi: genotyping structural variations with long reads.
Lecompte L, Peterlongo P, Lavenier D, Lemaitre C. Lecompte L, et al. Among authors: peterlongo p. Bioinformatics. 2020 Nov 1;36(17):4568-4575. doi: 10.1093/bioinformatics/btaa527. Bioinformatics. 2020. PMID: 32437523
257 results