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Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy.
Nat Commun. 2022 Aug 30;13(1):5107. doi: 10.1038/s41467-022-32397-8.
Nat Commun. 2022.
PMID: 36042219
Free PMC article.
Metagenomic Assembly: Overview, Challenges and Applications.
Ghurye JS, Cepeda-Espinoza V, Pop M.
Ghurye JS, et al.
Yale J Biol Med. 2016 Sep 30;89(3):353-362. eCollection 2016 Sep.
Yale J Biol Med. 2016.
PMID: 27698619
Free PMC article.
Review.
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Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018.
Meisel JS, Nasko DJ, Brubach B, Cepeda-Espinoza V, Chopyk J, Corrada-Bravo H, Fedarko M, Ghurye J, Javkar K, Olson ND, Shah N, Allard SM, Bazinet AL, Bergman NH, Brown A, Caporaso JG, Conlan S, DiRuggiero J, Forry SP, Hasan NA, Kralj J, Luethy PM, Milton DK, Ondov BD, Preheim S, Ratnayake S, Rogers SM, Rosovitz MJ, Sakowski EG, Schliebs NO, Sommer DD, Ternus KL, Uritskiy G, Zhang SX, Pop M, Treangen TJ.
Meisel JS, et al.
Microbiome. 2018 Nov 5;6(1):197. doi: 10.1186/s40168-018-0582-5.
Microbiome. 2018.
PMID: 30396371
Free PMC article.
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Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.
Olson ND, Treangen TJ, Hill CM, Cepeda-Espinoza V, Ghurye J, Koren S, Pop M.
Olson ND, et al.
Brief Bioinform. 2019 Jul 19;20(4):1140-1150. doi: 10.1093/bib/bbx098.
Brief Bioinform. 2019.
PMID: 28968737
Free PMC article.
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