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Page 1
Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy.
Parikh VN, Ioannidis AG, Jimenez-Morales D, Gorzynski JE, De Jong HN, Liu X, Roque J, Cepeda-Espinoza VP, Osoegawa K, Hughes C, Sutton SC, Youlton N, Joshi R, Amar D, Tanigawa Y, Russo D, Wong J, Lauzon JT, Edelson J, Mas Montserrat D, Kwon Y, Rubinacci S, Delaneau O, Cappello L, Kim J, Shoura MJ, Raja AN, Watson N, Hammond N, Spiteri E, Mallempati KC, Montero-Martín G, Christle J, Kim J, Kirillova A, Seo K, Huang Y, Zhao C, Moreno-Grau S, Hershman SG, Dalton KP, Zhen J, Kamm J, Bhatt KD, Isakova A, Morri M, Ranganath T, Blish CA, Rogers AJ, Nadeau K, Yang S, Blomkalns A, O'Hara R, Neff NF, DeBoever C, Szalma S, Wheeler MT, Gates CM, Farh K, Schroth GP, Febbo P, deSouza F, Cornejo OE, Fernandez-Vina M, Kistler A, Palacios JA, Pinsky BA, Bustamante CD, Rivas MA, Ashley EA. Parikh VN, et al. Among authors: mallempati kc. Nat Commun. 2022 Aug 30;13(1):5107. doi: 10.1038/s41467-022-32397-8. Nat Commun. 2022. PMID: 36042219 Free PMC article.
High-throughput SARS-CoV-2 and host genome sequencing from single nasopharyngeal swabs.
Gorzynski JE, De Jong HN, Amar D, Hughes CR, Ioannidis A, Bierman R, Liu D, Tanigawa Y, Kistler A, Kamm J, Kim J, Cappello L, Neff NF, Rubinacci S, Delaneau O, Shoura MJ, Seo K, Kirillova A, Raja A, Sutton S, Huang C, Sahoo MK, Mallempati KC, Montero-Martin G, Osoegawa K, Jimenez-Morales D, Watson N, Hammond N, Joshi R, Fernandez-Vina M, Christle JW, Wheeler MT, Febbo P, Farh K, Schroth G, Desouza F, Palacios J, Salzman J, Pinsky BA, Rivas MA, Bustamante CD, Ashley EA, Parikh VN. Gorzynski JE, et al. Among authors: mallempati kc. medRxiv [Preprint]. 2020 Sep 1:2020.07.27.20163147. doi: 10.1101/2020.07.27.20163147. medRxiv. 2020. PMID: 32766602 Free PMC article. Preprint.
High Resolution Haplotype Analyses of Classical HLA Genes in Families With Multiple Sclerosis Highlights the Role of HLA-DP Alleles in Disease Susceptibility.
Osoegawa K, Creary LE, Montero-Martín G, Mallempati KC, Gangavarapu S, Caillier SJ, Santaniello A, Isobe N, Hollenbach JA, Hauser SL, Oksenberg JR, Fernández-Viňa MA. Osoegawa K, et al. Among authors: mallempati kc. Front Immunol. 2021 May 25;12:644838. doi: 10.3389/fimmu.2021.644838. eCollection 2021. Front Immunol. 2021. PMID: 34211458 Free PMC article. Clinical Trial.
Next-generation sequencing reveals new information about HLA allele and haplotype diversity in a large European American population.
Creary LE, Gangavarapu S, Mallempati KC, Montero-Martín G, Caillier SJ, Santaniello A, Hollenbach JA, Oksenberg JR, Fernández-Viña MA. Creary LE, et al. Among authors: mallempati kc. Hum Immunol. 2019 Oct;80(10):807-822. doi: 10.1016/j.humimm.2019.07.275. Epub 2019 Jul 22. Hum Immunol. 2019. PMID: 31345698 Free PMC article.
Limited Variation in BK Virus T-Cell Epitopes Revealed by Next-Generation Sequencing.
Sahoo MK, Tan SK, Chen SF, Kapusinszky B, Concepcion KR, Kjelson L, Mallempati K, Farina HM, Fernández-Viña M, Tyan D, Grimm PC, Anderson MW, Concepcion W, Pinsky BA. Sahoo MK, et al. J Clin Microbiol. 2015 Oct;53(10):3226-33. doi: 10.1128/JCM.01385-15. Epub 2015 Jul 22. J Clin Microbiol. 2015. PMID: 26202116 Free PMC article.
HLA alleles and haplotypes observed in 263 US families.
Osoegawa K, Mallempati KC, Gangavarapu S, Oki A, Gendzekhadze K, Marino SR, Brown NK, Bettinotti MP, Weimer ET, Montero-Martín G, Creary LE, Vayntrub TA, Chang CJ, Askar M, Mack SJ, Fernández-Viña MA. Osoegawa K, et al. Among authors: mallempati kc. Hum Immunol. 2019 Sep;80(9):644-660. doi: 10.1016/j.humimm.2019.05.018. Epub 2019 Jun 27. Hum Immunol. 2019. PMID: 31256909 Free PMC article.
High-resolution characterization of allelic and haplotypic HLA frequency distribution in a Spanish population using high-throughput next-generation sequencing.
Montero-Martín G, Mallempati KC, Gangavarapu S, Sánchez-Gordo F, Herrero-Mata MJ, Balas A, Vicario JL, Sánchez-García F, González-Escribano MF, Muro M, Moya-Quiles MR, González-Fernández R, Ocejo-Vinyals JG, Marín L, Creary LE, Osoegawa K, Vayntrub T, Caro-Oleas JL, Vilches C, Planelles D, Fernández-Viña MA. Montero-Martín G, et al. Among authors: mallempati kc. Hum Immunol. 2019 Jul;80(7):429-436. doi: 10.1016/j.humimm.2019.02.005. Epub 2019 Feb 11. Hum Immunol. 2019. PMID: 30763600 Free PMC article.
16 results