Chen W - Search Results

1

SECANT: a biology-guided semi-supervised method for clustering, classification, and annotation of single-cell multi-omics.

Wang X, Xu Z, Hu H, Zhou X, Zhang Y, Lafyatis R, Chen K, Huang H, Ding Y, Duerr RH, Chen W. Wang X, et al. Among authors: chen k, chen w. PNAS Nexus. 2022 Aug 19;1(4):pgac165. doi: 10.1093/pnasnexus/pgac165. eCollection 2022 Sep. PNAS Nexus. 2022. PMID: 36157595 Free PMC article.

2

AIM2 Inflammasome Is Critical for Influenza-Induced Lung Injury and Mortality.

Zhang H, Luo J, Alcorn JF, Chen K, Fan S, Pilewski J, Liu A, Chen W, Kolls JK, Wang J. Zhang H, et al. Among authors: chen k, chen w. J Immunol. 2017 Jun 1;198(11):4383-4393. doi: 10.4049/jimmunol.1600714. Epub 2017 Apr 19. J Immunol. 2017. PMID: 28424239 Free PMC article.

3

Adaptive plasticity of IL-10⁺ and IL-35⁺ T_reg cells cooperatively promotes tumor T cell exhaustion.

Sawant DV, Yano H, Chikina M, Zhang Q, Liao M, Liu C, Callahan DJ, Sun Z, Sun T, Tabib T, Pennathur A, Corry DB, Luketich JD, Lafyatis R, Chen W, Poholek AC, Bruno TC, Workman CJ, Vignali DAA. Sawant DV, et al. Among authors: chen w. Nat Immunol. 2019 Jun;20(6):724-735. doi: 10.1038/s41590-019-0346-9. Epub 2019 Apr 1. Nat Immunol. 2019. PMID: 30936494 Free PMC article.

4

A Bayesian mixture model for clustering droplet-based single-cell transcriptomic data from population studies.

Sun Z, Chen L, Xin H, Jiang Y, Huang Q, Cillo AR, Tabib T, Kolls JK, Bruno TC, Lafyatis R, Vignali DAA, Chen K, Ding Y, Hu M, Chen W. Sun Z, et al. Among authors: chen k, chen l, chen w. Nat Commun. 2019 Apr 9;10(1):1649. doi: 10.1038/s41467-019-09639-3. Nat Commun. 2019. PMID: 30967541 Free PMC article.

5

Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis.

Morse C, Tabib T, Sembrat J, Buschur KL, Bittar HT, Valenzi E, Jiang Y, Kass DJ, Gibson K, Chen W, Mora A, Benos PV, Rojas M, Lafyatis R. Morse C, et al. Among authors: chen w. Eur Respir J. 2019 Aug 22;54(2):1802441. doi: 10.1183/13993003.02441-2018. Print 2019 Aug. Eur Respir J. 2019. PMID: 31221805 Free PMC article.

6

Deep-learning-based Prediction of Late Age-Related Macular Degeneration Progression.

Yan Q, Weeks DE, Xin H, Swaroop A, Chew EY, Huang H, Ding Y, Chen W. Yan Q, et al. Among authors: chen w. Nat Mach Intell. 2020 Feb;2(2):141-150. doi: 10.1038/s42256-020-0154-9. Epub 2020 Feb 14. Nat Mach Intell. 2020. PMID: 32285025 Free PMC article.

7

BREM-SC: a bayesian random effects mixture model for joint clustering single cell multi-omics data.

Wang X, Sun Z, Zhang Y, Xu Z, Xin H, Huang H, Duerr RH, Chen K, Ding Y, Chen W. Wang X, et al. Among authors: chen k, chen w. Nucleic Acids Res. 2020 Jun 19;48(11):5814-5824. doi: 10.1093/nar/gkaa314. Nucleic Acids Res. 2020. PMID: 32379315 Free PMC article.

8

Expression Quantitative Trait Methylation Analysis Reveals Methylomic Associations With Gene Expression in Childhood Asthma.

Kim S, Forno E, Zhang R, Park HJ, Xu Z, Yan Q, Boutaoui N, Acosta-Pérez E, Canino G, Chen W, Celedón JC. Kim S, et al. Among authors: chen w. Chest. 2020 Nov;158(5):1841-1856. doi: 10.1016/j.chest.2020.05.601. Epub 2020 Jun 20. Chest. 2020. PMID: 32569636 Free PMC article.

9

Artificial-cell-type aware cell-type classification in CITE-seq.

Lian Q, Xin H, Ma J, Konnikova L, Chen W, Gu J, Chen K. Lian Q, et al. Among authors: chen k, chen w. Bioinformatics. 2020 Jul 1;36(Suppl_1):i542-i550. doi: 10.1093/bioinformatics/btaa467. Bioinformatics. 2020. PMID: 32657383 Free PMC article.

10

GMM-Demux: sample demultiplexing, multiplet detection, experiment planning, and novel cell-type verification in single cell sequencing.

Xin H, Lian Q, Jiang Y, Luo J, Wang X, Erb C, Xu Z, Zhang X, Heidrich-O'Hare E, Yan Q, Duerr RH, Chen K, Chen W. Xin H, et al. Among authors: chen k, chen w. Genome Biol. 2020 Jul 30;21(1):188. doi: 10.1186/s13059-020-02084-2. Genome Biol. 2020. PMID: 32731885 Free PMC article.

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