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High-throughput nanopore sequencing of Treponema pallidum tandem repeat genes arp and tp0470 reveals clade-specific patterns and recapitulates global whole genome phylogeny.
Lieberman NAP, Armstrong TD, Chung B, Pfalmer D, Hennelly CM, Haynes A, Romeis E, Wang QQ, Zhang RL, Kou CX, Ciccarese G, Conte ID, Cusini M, Drago F, Nakayama SI, Lee K, Ohnishi M, Konda KA, Vargas SK, Eguiluz M, Caceres CF, Klausner JD, Mitja O, Rompalo A, Mulcahy F, Hook EW 3rd, Hoffman IF, Matoga MM, Zheng H, Yang B, Lopez-Medina E, Ramirez LG, Radolf JD, Hawley KL, Salazar JC, Lukehart SA, Seña AC, Parr JB, Giacani L, Greninger AL. Lieberman NAP, et al. Among authors: greninger al. Front Microbiol. 2022 Sep 20;13:1007056. doi: 10.3389/fmicb.2022.1007056. eCollection 2022. Front Microbiol. 2022. PMID: 36204625 Free PMC article.
In vivo antiviral host transcriptional response to SARS-CoV-2 by viral load, sex, and age.
Lieberman NAP, Peddu V, Xie H, Shrestha L, Huang ML, Mears MC, Cajimat MN, Bente DA, Shi PY, Bovier F, Roychoudhury P, Jerome KR, Moscona A, Porotto M, Greninger AL. Lieberman NAP, et al. Among authors: greninger al. PLoS Biol. 2020 Sep 8;18(9):e3000849. doi: 10.1371/journal.pbio.3000849. eCollection 2020 Sep. PLoS Biol. 2020. PMID: 32898168 Free PMC article.
Longitudinal TprK profiling of in vivo and in vitro-propagated Treponema pallidum subsp. pallidum reveals accumulation of antigenic variants in absence of immune pressure.
Lin MJ, Haynes AM, Addetia A, Lieberman NAP, Phung Q, Xie H, Nguyen TV, Molini BJ, Lukehart SA, Giacani L, Greninger AL. Lin MJ, et al. Among authors: greninger al. PLoS Negl Trop Dis. 2021 Sep 7;15(9):e0009753. doi: 10.1371/journal.pntd.0009753. eCollection 2021 Sep. PLoS Negl Trop Dis. 2021. PMID: 34492041 Free PMC article.
Treponema pallidum genome sequencing from six continents reveals variability in vaccine candidate genes and dominance of Nichols clade strains in Madagascar.
Lieberman NAP, Lin MJ, Xie H, Shrestha L, Nguyen T, Huang ML, Haynes AM, Romeis E, Wang QQ, Zhang RL, Kou CX, Ciccarese G, Dal Conte I, Cusini M, Drago F, Nakayama SI, Lee K, Ohnishi M, Konda KA, Vargas SK, Eguiluz M, Caceres CF, Klausner JD, Mitjà O, Rompalo A, Mulcahy F, Hook EW 3rd, Lukehart SA, Casto AM, Roychoudhury P, DiMaio F, Giacani L, Greninger AL. Lieberman NAP, et al. Among authors: greninger al. PLoS Negl Trop Dis. 2021 Dec 22;15(12):e0010063. doi: 10.1371/journal.pntd.0010063. eCollection 2021 Dec. PLoS Negl Trop Dis. 2021. PMID: 34936652 Free PMC article.
Host-pathogen dynamics in longitudinal clinical specimens from patients with COVID-19.
Lin MJ, Rachleff VM, Xie H, Shrestha L, Lieberman NAP, Peddu V, Addetia A, Casto AM, Breit N, Mathias PC, Huang ML, Jerome KR, Greninger AL, Roychoudhury P. Lin MJ, et al. Among authors: greninger al. Sci Rep. 2022 Apr 7;12(1):5856. doi: 10.1038/s41598-022-09752-2. Sci Rep. 2022. PMID: 35393464 Free PMC article.
Evaluation and clinical validation of monkeypox (mpox) virus real-time PCR assays.
Mills MG, Juergens KB, Gov JP, McCormick CJ, Sampoleo R, Kachikis A, Amory JK, Fang FC, Pérez-Osorio AC, Lieberman NAP, Greninger AL. Mills MG, et al. Among authors: greninger al. J Clin Virol. 2023 Feb;159:105373. doi: 10.1016/j.jcv.2022.105373. Epub 2022 Dec 23. J Clin Virol. 2023. PMID: 36603329 Free PMC article.
356 results