Barash Y - Search Results

1

FBXW7β isoform drives transcriptional activation of the proinflammatory TNF cluster in human pro-B cells.

Yang SY, Hayer KE, Fazelinia H, Spruce LA, Asnani M, Black KL, Naqvi AS, Pillai V, Barash Y, Elenitoba-Johnson KSJ, Thomas-Tikhonenko A. Yang SY, et al. Among authors: barash y. Blood Adv. 2023 Apr 11;7(7):1077-1091. doi: 10.1182/bloodadvances.2022007910. Blood Adv. 2023. PMID: 36322817 Free PMC article.

2

AVISPA: a web tool for the prediction and analysis of alternative splicing.

Barash Y, Vaquero-Garcia J, González-Vallinas J, Xiong HY, Gao W, Lee LJ, Frey BJ. Barash Y, et al. Genome Biol. 2013;14(10):R114. doi: 10.1186/gb-2013-14-10-r114. Genome Biol. 2013. PMID: 24156756 Free PMC article.

3

A SLM2 Feedback Pathway Controls Cortical Network Activity and Mouse Behavior.

Ehrmann I, Gazzara MR, Pagliarini V, Dalgliesh C, Kheirollahi-Chadegani M, Xu Y, Cesari E, Danilenko M, Maclennan M, Lowdon K, Vogel T, Keskivali-Bond P, Wells S, Cater H, Fort P, Santibanez-Koref M, Middei S, Sette C, Clowry GJ, Barash Y, Cunningham MO, Elliott DJ. Ehrmann I, et al. Among authors: barash y. Cell Rep. 2016 Dec 20;17(12):3269-3280. doi: 10.1016/j.celrep.2016.12.002. Cell Rep. 2016. PMID: 28009295 Free PMC article.

4

A systematic analysis of intronic sequences downstream of 5' splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation.

Aznarez I, Barash Y, Shai O, He D, Zielenski J, Tsui LC, Parkinson J, Frey BJ, Rommens JM, Blencowe BJ. Aznarez I, et al. Among authors: barash y. Genome Res. 2008 Aug;18(8):1247-58. doi: 10.1101/gr.073155.107. Epub 2008 May 2. Genome Res. 2008. PMID: 18456862 Free PMC article.

5

Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression.

Marion RM, Regev A, Segal E, Barash Y, Koller D, Friedman N, O'Shea EK. Marion RM, et al. Among authors: barash y. Proc Natl Acad Sci U S A. 2004 Oct 5;101(40):14315-22. doi: 10.1073/pnas.0405353101. Epub 2004 Sep 7. Proc Natl Acad Sci U S A. 2004. PMID: 15353587 Free PMC article.

6

Rapid and Scalable Profiling of Nascent RNA with fastGRO.

Barbieri E, Hill C, Quesnel-Vallières M, Zucco AJ, Barash Y, Gardini A. Barbieri E, et al. Among authors: barash y. Cell Rep. 2020 Nov 10;33(6):108373. doi: 10.1016/j.celrep.2020.108373. Cell Rep. 2020. PMID: 33176136 Free PMC article.

7

Comparative analysis of algorithms for signal quantitation from oligonucleotide microarrays.

Barash Y, Dehan E, Krupsky M, Franklin W, Geraci M, Friedman N, Kaminski N. Barash Y, et al. Bioinformatics. 2004 Apr 12;20(6):839-46. doi: 10.1093/bioinformatics/btg487. Epub 2004 Jan 29. Bioinformatics. 2004. PMID: 14751998

8

Functional coordination of alternative splicing in the mammalian central nervous system.

Fagnani M, Barash Y, Ip JY, Misquitta C, Pan Q, Saltzman AL, Shai O, Lee L, Rozenhek A, Mohammad N, Willaime-Morawek S, Babak T, Zhang W, Hughes TR, van der Kooy D, Frey BJ, Blencowe BJ. Fagnani M, et al. Among authors: barash y. Genome Biol. 2007;8(6):R108. doi: 10.1186/gb-2007-8-6-r108. Genome Biol. 2007. PMID: 17565696 Free PMC article.

9

Deciphering the splicing code.

Barash Y, Calarco JA, Gao W, Pan Q, Wang X, Shai O, Blencowe BJ, Frey BJ. Barash Y, et al. Nature. 2010 May 6;465(7294):53-9. doi: 10.1038/nature09000. Nature. 2010. PMID: 20445623

10

Context-specific Bayesian clustering for gene expression data.

Barash Y, Friedman N. Barash Y, et al. J Comput Biol. 2002;9(2):169-91. doi: 10.1089/10665270252935403. J Comput Biol. 2002. PMID: 12015876

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