Gerstein M - Search Results

1

Illuminating links between cis-regulators and trans-acting variants in the human prefrontal cortex.

Liu S, Won H, Clarke D, Matoba N, Khullar S, Mu Y, Wang D, Gerstein M. Liu S, et al. Among authors: gerstein m. Genome Med. 2022 Nov 24;14(1):133. doi: 10.1186/s13073-022-01133-8. Genome Med. 2022. PMID: 36424644 Free PMC article.

2

Predicting essential genes in fungal genomes.

Seringhaus M, Paccanaro A, Borneman A, Snyder M, Gerstein M. Seringhaus M, et al. Among authors: gerstein m. Genome Res. 2006 Sep;16(9):1126-35. doi: 10.1101/gr.5144106. Epub 2006 Aug 9. Genome Res. 2006. PMID: 16899653 Free PMC article.

3

Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome.

Emanuelsson O, Nagalakshmi U, Zheng D, Rozowsky JS, Urban AE, Du J, Lian Z, Stolc V, Weissman S, Snyder M, Gerstein MB. Emanuelsson O, et al. Among authors: gerstein mb. Genome Res. 2007 Jun;17(6):886-97. doi: 10.1101/gr.5014606. Epub 2006 Nov 21. Genome Res. 2007. PMID: 17119069 Free PMC article.

4

The DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel loci.

Rozowsky JS, Newburger D, Sayward F, Wu J, Jordan G, Korbel JO, Nagalakshmi U, Yang J, Zheng D, Guigó R, Gingeras TR, Weissman S, Miller P, Snyder M, Gerstein MB. Rozowsky JS, et al. Among authors: gerstein mb. Genome Res. 2007 Jun;17(6):732-45. doi: 10.1101/gr.5696007. Genome Res. 2007. PMID: 17567993 Free PMC article.

5

Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions.

Zhang ZD, Paccanaro A, Fu Y, Weissman S, Weng Z, Chang J, Snyder M, Gerstein MB. Zhang ZD, et al. Among authors: gerstein mb. Genome Res. 2007 Jun;17(6):787-97. doi: 10.1101/gr.5573107. Genome Res. 2007. PMID: 17567997 Free PMC article.

6

Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history.

Kim PM, Lam HY, Urban AE, Korbel JO, Affourtit J, Grubert F, Chen X, Weissman S, Snyder M, Gerstein MB. Kim PM, et al. Among authors: gerstein mb. Genome Res. 2008 Dec;18(12):1865-74. doi: 10.1101/gr.081422.108. Epub 2008 Oct 8. Genome Res. 2008. PMID: 18842824 Free PMC article.

7

Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans.

Niu W, Lu ZJ, Zhong M, Sarov M, Murray JI, Brdlik CM, Janette J, Chen C, Alves P, Preston E, Slightham C, Jiang L, Hyman AA, Kim SK, Waterston RH, Gerstein M, Snyder M, Reinke V. Niu W, et al. Among authors: gerstein m. Genome Res. 2011 Feb;21(2):245-54. doi: 10.1101/gr.114587.110. Epub 2010 Dec 22. Genome Res. 2011. PMID: 21177963 Free PMC article.

8

Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data.

Lu ZJ, Yip KY, Wang G, Shou C, Hillier LW, Khurana E, Agarwal A, Auerbach R, Rozowsky J, Cheng C, Kato M, Miller DM, Slack F, Snyder M, Waterston RH, Reinke V, Gerstein MB. Lu ZJ, et al. Among authors: gerstein mb. Genome Res. 2011 Feb;21(2):276-85. doi: 10.1101/gr.110189.110. Epub 2010 Dec 22. Genome Res. 2011. PMID: 21177971 Free PMC article.

9

Integration of protein motions with molecular networks reveals different mechanisms for permanent and transient interactions.

Bhardwaj N, Abyzov A, Clarke D, Shou C, Gerstein MB. Bhardwaj N, et al. Protein Sci. 2011 Oct;20(10):1745-54. doi: 10.1002/pro.710. Epub 2011 Sep 15. Protein Sci. 2011. PMID: 21826754 Free PMC article.

10

Genome-wide analysis of chromatin features identifies histone modification sensitive and insensitive yeast transcription factors.

Cheng C, Shou C, Yip KY, Gerstein MB. Cheng C, et al. Genome Biol. 2011 Nov 7;12(11):R111. doi: 10.1186/gb-2011-12-11-r111. Genome Biol. 2011. PMID: 22060676 Free PMC article.

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