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Repeat Detector: versatile sizing of expanded tandem repeats and identification of interrupted alleles from targeted DNA sequencing.
Taylor AS, Barros D, Gobet N, Schuepbach T, McAllister B, Aeschbach L, Randall EL, Trofimenko E, Heuchan ER, Barszcz P, Ciosi M, Morgan J, Hafford-Tear NJ, Davidson AE, Massey TH, Monckton DG, Jones L, Network RIOTEHD, Xenarios I, Dion V. Taylor AS, et al. Among authors: xenarios i. NAR Genom Bioinform. 2022 Dec 5;4(4):lqac089. doi: 10.1093/nargab/lqac089. eCollection 2022 Dec. NAR Genom Bioinform. 2022. PMID: 36478959 Free PMC article.
Three-dimensional chromatin interactions remain stable upon CAG/CTG repeat expansion.
Ruiz Buendía GA, Leleu M, Marzetta F, Vanzan L, Tan JY, Ythier V, Randall EL, Marques AC, Baubec T, Murr R, Xenarios I, Dion V. Ruiz Buendía GA, et al. Among authors: xenarios i. Sci Adv. 2020 Jul 3;6(27):eaaz4012. doi: 10.1126/sciadv.aaz4012. eCollection 2020 Jul. Sci Adv. 2020. PMID: 32656337 Free PMC article.
Towards mouse genetic-specific RNA-sequencing read mapping.
Gobet N, Jan M, Franken P, Xenarios I. Gobet N, et al. Among authors: xenarios i. PLoS Comput Biol. 2022 Sep 26;18(9):e1010552. doi: 10.1371/journal.pcbi.1010552. eCollection 2022 Sep. PLoS Comput Biol. 2022. PMID: 36155976 Free PMC article.
pfsearchV3: a code acceleration and heuristic to search PROSITE profiles.
Schuepbach T, Pagni M, Bridge A, Bougueleret L, Xenarios I, Cerutti L. Schuepbach T, et al. Among authors: xenarios i. Bioinformatics. 2013 May 1;29(9):1215-7. doi: 10.1093/bioinformatics/btt129. Epub 2013 Mar 16. Bioinformatics. 2013. PMID: 23505298 Free PMC article.
Probabilistic base calling of Solexa sequencing data.
Rougemont J, Amzallag A, Iseli C, Farinelli L, Xenarios I, Naef F. Rougemont J, et al. Among authors: xenarios i. BMC Bioinformatics. 2008 Oct 13;9:431. doi: 10.1186/1471-2105-9-431. BMC Bioinformatics. 2008. PMID: 18851737 Free PMC article.
PamgeneAnalyzeR: open and reproducible pipeline for kinase profiling.
Bekkar A, Nasrallah A, Guex N, Fajas L, Xenarios I, Lopez-Mejia IC. Bekkar A, et al. Among authors: xenarios i. Bioinformatics. 2020 Dec 22;36(20):5117-5119. doi: 10.1093/bioinformatics/btz858. Bioinformatics. 2020. PMID: 31922550 Free PMC article.
TRAL: tandem repeat annotation library.
Schaper E, Korsunsky A, Pečerska J, Messina A, Murri R, Stockinger H, Zoller S, Xenarios I, Anisimova M. Schaper E, et al. Among authors: xenarios i. Bioinformatics. 2015 Sep 15;31(18):3051-3. doi: 10.1093/bioinformatics/btv306. Epub 2015 May 18. Bioinformatics. 2015. PMID: 25987568 Free article.
225 results