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cloudrnaSPAdes: isoform assembly using bulk barcoded RNA sequencing data.
Meleshko D, Prjbelski AD, Raiko M, Tomescu AI, Tilgner H, Hajirasouliha I. Meleshko D, et al. Among authors: hajirasouliha i. Bioinformatics. 2024 Feb 1;40(2):btad781. doi: 10.1093/bioinformatics/btad781. Bioinformatics. 2024. PMID: 38262343 Free PMC article.
Automatic Ploidy Prediction and Quality Assessment of Human Blastocyst Using Time-Lapse Imaging.
Rajendran S, Brendel M, Barnes J, Zhan Q, Malmsten JE, Zisimopoulos P, Sigaras A, Ofori-Atta K, Meseguer M, Miller KA, Hoffman D, Rosenwaks Z, Elemento O, Zaninovic N, Hajirasouliha I. Rajendran S, et al. Among authors: hajirasouliha i. bioRxiv [Preprint]. 2023 Sep 2:2023.08.31.555741. doi: 10.1101/2023.08.31.555741. bioRxiv. 2023. PMID: 37693566 Free PMC article. Preprint.
Ariadne: synthetic long read deconvolution using assembly graphs.
Mak L, Meleshko D, Danko DC, Barakzai WN, Maharjan S, Belchikov N, Hajirasouliha I. Mak L, et al. Among authors: hajirasouliha i. Genome Biol. 2023 Aug 28;24(1):197. doi: 10.1186/s13059-023-03033-5. Genome Biol. 2023. PMID: 37641111 Free PMC article.
cloudrnaSPAdes: Isoform assembly using bulk barcoded RNA sequencing data.
Meleshko D, Prjbelski AD, Raiko M, Tomescu AI, Tilgner H, Hajirasouliha I. Meleshko D, et al. Among authors: hajirasouliha i. bioRxiv [Preprint]. 2023 Jul 27:2023.07.25.550587. doi: 10.1101/2023.07.25.550587. bioRxiv. 2023. PMID: 37546844 Free PMC article. Updated. Preprint.
A modular metagenomics analysis system for integrated multi-step data exploration.
Mak L, Tierney B, Ronkowski C, Toomey M, Martinez JSA, Zimmerman S, Fu C, Kopbayeva M, Noyvert A, Farthing B, Tang S, Mason C, Hajirasouliha I. Mak L, et al. Among authors: hajirasouliha i. bioRxiv [Preprint]. 2023 Apr 9:2023.04.09.536171. doi: 10.1101/2023.04.09.536171. bioRxiv. 2023. PMID: 37066359 Free PMC article. Preprint.
Back in 3D-a report on Genome Informatics 2022.
Hajirasouliha I, Semrau S. Hajirasouliha I, et al. Genome Biol. 2023 Mar 28;24(1):57. doi: 10.1186/s13059-023-02870-8. Genome Biol. 2023. PMID: 36978161 Free PMC article.
A non-invasive artificial intelligence approach for the prediction of human blastocyst ploidy: a retrospective model development and validation study.
Barnes J, Brendel M, Gao VR, Rajendran S, Kim J, Li Q, Malmsten JE, Sierra JT, Zisimopoulos P, Sigaras A, Khosravi P, Meseguer M, Zhan Q, Rosenwaks Z, Elemento O, Zaninovic N, Hajirasouliha I. Barnes J, et al. Among authors: hajirasouliha i. Lancet Digit Health. 2023 Jan;5(1):e28-e40. doi: 10.1016/S2589-7500(22)00213-8. Lancet Digit Health. 2023. PMID: 36543475 Free PMC article.
Weakly-supervised tumor purity prediction from frozen H&E stained slides.
Brendel M, Getseva V, Assaad MA, Sigouros M, Sigaras A, Kane T, Khosravi P, Mosquera JM, Elemento O, Hajirasouliha I. Brendel M, et al. Among authors: hajirasouliha i. EBioMedicine. 2022 Jun;80:104067. doi: 10.1016/j.ebiom.2022.104067. Epub 2022 May 26. EBioMedicine. 2022. PMID: 35644123 Free PMC article.
66 results