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Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories.
Bentley BP, Carrasco-Valenzuela T, Ramos EKS, Pawar H, Souza Arantes L, Alexander A, Banerjee SM, Masterson P, Kuhlwilm M, Pippel M, Mountcastle J, Haase B, Uliano-Silva M, Formenti G, Howe K, Chow W, Tracey A, Sims Y, Pelan S, Wood J, Yetsko K, Perrault JR, Stewart K, Benson SR, Levy Y, Todd EV, Shaffer HB, Scott P, Henen BT, Murphy RW, Mohr DW, Scott AF, Duffy DJ, Gemmell NJ, Suh A, Winkler S, Thibaud-Nissen F, Nery MF, Marques-Bonet T, Antunes A, Tikochinski Y, Dutton PH, Fedrigo O, Myers EW, Jarvis ED, Mazzoni CJ, Komoroske LM. Bentley BP, et al. Among authors: alexander a. Proc Natl Acad Sci U S A. 2023 Feb 14;120(7):e2201076120. doi: 10.1073/pnas.2201076120. Epub 2023 Feb 7. Proc Natl Acad Sci U S A. 2023. PMID: 36749728 Free PMC article.
The admixed brushtail possum genome reveals invasion history in New Zealand and novel imprinted genes.
Bond DM, Ortega-Recalde O, Laird MK, Hayakawa T, Richardson KS, Reese FCB, Kyle B, McIsaac-Williams BE, Robertson BC, van Heezik Y, Adams AL, Chang WS, Haase B, Mountcastle J, Driller M, Collins J, Howe K, Go Y, Thibaud-Nissen F, Lister NC, Waters PD, Fedrigo O, Jarvis ED, Gemmell NJ, Alexander A, Hore TA. Bond DM, et al. Among authors: alexander a. Nat Commun. 2023 Oct 17;14(1):6364. doi: 10.1038/s41467-023-41784-8. Nat Commun. 2023. PMID: 37848431 Free PMC article.
A framework for identifying fertility gene targets for mammalian pest control.
Clark AC, Edison R, Esvelt K, Kamau S, Dutoit L, Champer J, Champer SE, Messer PW, Alexander A, Gemmell NJ. Clark AC, et al. Among authors: alexander a. Mol Ecol Resour. 2024 Feb;24(2):e13901. doi: 10.1111/1755-0998.13901. Epub 2023 Nov 27. Mol Ecol Resour. 2024. PMID: 38009398
The Novel Evolution of the Sperm Whale Genome.
Warren WC, Kuderna L, Alexander A, Catchen J, Pérez-Silva JG, López-Otín C, Quesada V, Minx P, Tomlinson C, Montague MJ, Farias FHG, Walter RB, Marques-Bonet T, Glenn T, Kieran TJ, Wise SS, Wise JP Jr, Waterhouse RM, Wise JP Sr. Warren WC, et al. Among authors: alexander a. Genome Biol Evol. 2017 Dec 1;9(12):3260-3264. doi: 10.1093/gbe/evx187. Genome Biol Evol. 2017. PMID: 28985367 Free PMC article.
Receding ice drove parallel expansions in Southern Ocean penguins.
Cole TL, Dutoit L, Dussex N, Hart T, Alexander A, Younger JL, Clucas GV, Frugone MJ, Cherel Y, Cuthbert R, Ellenberg U, Fiddaman SR, Hiscock J, Houston D, Jouventin P, Mattern T, Miller G, Miskelly C, Nolan P, Polito MJ, Quillfeldt P, Ryan PG, Smith A, Tennyson AJD, Thompson D, Wienecke B, Vianna JA, Waters JM. Cole TL, et al. Among authors: alexander a. Proc Natl Acad Sci U S A. 2019 Dec 26;116(52):26690-26696. doi: 10.1073/pnas.1904048116. Epub 2019 Dec 16. Proc Natl Acad Sci U S A. 2019. PMID: 31843914 Free PMC article.
Runs of homozygosity in killer whale genomes provide a global record of demographic histories.
Foote AD, Hooper R, Alexander A, Baird RW, Baker CS, Ballance L, Barlow J, Brownlow A, Collins T, Constantine R, Dalla Rosa L, Davison NJ, Durban JW, Esteban R, Excoffier L, Martin SLF, Forney KA, Gerrodette T, Gilbert MTP, Guinet C, Hanson MB, Li S, Martin MD, Robertson KM, Samarra FIP, de Stephanis R, Tavares SB, Tixier P, Totterdell JA, Wade P, Wolf JBW, Fan G, Zhang Y, Morin PA. Foote AD, et al. Among authors: alexander a. Mol Ecol. 2021 Dec;30(23):6162-6177. doi: 10.1111/mec.16137. Epub 2021 Sep 2. Mol Ecol. 2021. PMID: 34416064 Free article.
Demography or selection on linked cultural traits or genes? Investigating the driver of low mtDNA diversity in the sperm whale using complementary mitochondrial and nuclear genome analyses.
Morin PA, Foote AD, Baker CS, Hancock-Hanser BL, Kaschner K, Mate BR, Mesnick SL, Pease VL, Rosel PE, Alexander A. Morin PA, et al. Among authors: alexander a. Mol Ecol. 2018 Jun;27(11):2604-2619. doi: 10.1111/mec.14698. Epub 2018 May 17. Mol Ecol. 2018. PMID: 29675902
1,921 results