Swanson CM - Search Results

1

An assessment of bioinformatics tools for the detection of human endogenous retroviral insertions in short-read genome sequencing data.

Bowles H, Kabiljo R, Al Khleifat A, Jones A, Quinn JP, Dobson RJB, Swanson CM, Al-Chalabi A, Iacoangeli A. Bowles H, et al. Among authors: swanson cm. Front Bioinform. 2023 Feb 8;2:1062328. doi: 10.3389/fbinf.2022.1062328. eCollection 2022. Front Bioinform. 2023. PMID: 36845320 Free PMC article.

2

RetroSnake: A modular pipeline to detect human endogenous retroviruses in genome sequencing data.

Kabiljo R, Bowles H, Marriott H, Jones AR, Bouton CR, Dobson RJB, Quinn JP, Al Khleifat A, Swanson CM, Al-Chalabi A, Iacoangeli A. Kabiljo R, et al. Among authors: swanson cm. iScience. 2022 Oct 7;25(11):105289. doi: 10.1016/j.isci.2022.105289. eCollection 2022 Nov 18. iScience. 2022. PMID: 36339261 Free PMC article.

3

HIV-1 replication and APOBEC3 antiviral activity are not regulated by P bodies.

Phalora PK, Sherer NM, Wolinsky SM, Swanson CM, Malim MH. Phalora PK, et al. Among authors: swanson cm. J Virol. 2012 Nov;86(21):11712-24. doi: 10.1128/JVI.00595-12. Epub 2012 Aug 22. J Virol. 2012. PMID: 22915799 Free PMC article.

4

SARS-CoV-2 Is Restricted by Zinc Finger Antiviral Protein despite Preadaptation to the Low-CpG Environment in Humans.

Nchioua R, Kmiec D, Müller JA, Conzelmann C, Groß R, Swanson CM, Neil SJD, Stenger S, Sauter D, Münch J, Sparrer KMJ, Kirchhoff F. Nchioua R, et al. Among authors: swanson cm. mBio. 2020 Oct 16;11(5):e01930-20. doi: 10.1128/mBio.01930-20. mBio. 2020. PMID: 33067384 Free PMC article.

5

KHNYN is essential for the zinc finger antiviral protein (ZAP) to restrict HIV-1 containing clustered CpG dinucleotides.

Ficarelli M, Wilson H, Pedro Galão R, Mazzon M, Antzin-Anduetza I, Marsh M, Neil SJ, Swanson CM. Ficarelli M, et al. Among authors: swanson cm. Elife. 2019 Jul 9;8:e46767. doi: 10.7554/eLife.46767. Elife. 2019. PMID: 31284899 Free PMC article.

6

HIV-1 Vpr Induces Widespread Transcriptomic Changes in CD4⁺ T Cells Early Postinfection.

Bauby H, Ward CC, Hugh-White R, Swanson CM, Schulz R, Goujon C, Malim MH. Bauby H, et al. Among authors: swanson cm. mBio. 2021 Jun 29;12(3):e0136921. doi: 10.1128/mBio.01369-21. Epub 2021 Jun 22. mBio. 2021. PMID: 34154423 Free PMC article.

7

S-farnesylation is essential for antiviral activity of the long ZAP isoform against RNA viruses with diverse replication strategies.

Kmiec D, Lista MJ, Ficarelli M, Swanson CM, Neil SJD. Kmiec D, et al. Among authors: swanson cm. PLoS Pathog. 2021 Oct 25;17(10):e1009726. doi: 10.1371/journal.ppat.1009726. eCollection 2021 Oct. PLoS Pathog. 2021. PMID: 34695163 Free PMC article.

8

Cellular and molecular mechanisms of IMMunE dysfunction and Recovery from SEpsis-related critical illness in adults: An observational cohort study (IMMERSE) protocol paper.

Fish M, Arkless K, Jennings A, Wilson J, Carter MJ, Arbane G, Campos S, Novellas N, Wester R, Petrov N, Niazi U, Sanderson B, Ellis R, Saqi M, Spencer J, Singer M, Martinez-Nunez RT, Pitchford S, Swanson CM, Shankar-Hari M. Fish M, et al. Among authors: swanson cm. J Intensive Care Soc. 2022 Aug;23(3):318-324. doi: 10.1177/1751143720966286. Epub 2020 Nov 6. J Intensive Care Soc. 2022. PMID: 36033245 Free PMC article.

9

Strain-Dependent Restriction of Human Cytomegalovirus by Zinc Finger Antiviral Proteins.

Lista MJ, Witney AA, Nichols J, Davison AJ, Wilson H, Latham KA, Ravenhill BJ, Nightingale K, Stanton RJ, Weekes MP, Neil SJD, Swanson CM, Strang BL. Lista MJ, et al. Among authors: swanson cm. J Virol. 2023 Mar 30;97(3):e0184622. doi: 10.1128/jvi.01846-22. Epub 2023 Mar 14. J Virol. 2023. PMID: 36916924 Free PMC article.

10

Syn-CpG-Spacer: A Panel web app for synonymous recoding of viral genomes with CpG dinucleotides.

Sulkowski A, Bouton C, Swanson C. Sulkowski A, et al. J Open Source Softw. 2024 Apr 3;9(96):6332. doi: 10.21105/joss.06332. J Open Source Softw. 2024. PMID: 38650605 Free PMC article.

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