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Coordination of bacterial cell wall and outer membrane biosynthesis.
Hummels KR, Berry SP, Li Z, Taguchi A, Min JK, Walker S, Marks DS, Bernhardt TG. Hummels KR, et al. Among authors: marks ds. Nature. 2023 Mar;615(7951):300-304. doi: 10.1038/s41586-023-05750-0. Epub 2023 Mar 1. Nature. 2023. PMID: 36859542 Free PMC article.
Structure and mutagenic analysis of the lipid II flippase MurJ from Escherichia coli.
Zheng S, Sham LT, Rubino FA, Brock KP, Robins WP, Mekalanos JJ, Marks DS, Bernhardt TG, Kruse AC. Zheng S, et al. Among authors: marks ds. Proc Natl Acad Sci U S A. 2018 Jun 26;115(26):6709-6714. doi: 10.1073/pnas.1802192115. Epub 2018 Jun 11. Proc Natl Acad Sci U S A. 2018. PMID: 29891673 Free PMC article.
An in silico method to assess antibody fragment polyreactivity.
Harvey EP, Shin JE, Skiba MA, Nemeth GR, Hurley JD, Wellner A, Shaw AY, Miranda VG, Min JK, Liu CC, Marks DS, Kruse AC. Harvey EP, et al. Among authors: marks ds. Nat Commun. 2022 Dec 7;13(1):7554. doi: 10.1038/s41467-022-35276-4. Nat Commun. 2022. PMID: 36477674 Free PMC article.
scPerturb: harmonized single-cell perturbation data.
Peidli S, Green TD, Shen C, Gross T, Min J, Garda S, Yuan B, Schumacher LJ, Taylor-King JP, Marks DS, Luna A, Blüthgen N, Sander C. Peidli S, et al. Among authors: marks ds. Nat Methods. 2024 Mar;21(3):531-540. doi: 10.1038/s41592-023-02144-y. Epub 2024 Jan 26. Nat Methods. 2024. PMID: 38279009
GPR161 structure uncovers the redundant role of sterol-regulated ciliary cAMP signaling in the Hedgehog pathway.
Hoppe N, Harrison S, Hwang SH, Chen Z, Karelina M, Deshpande I, Suomivuori CM, Palicharla VR, Berry SP, Tschaikner P, Regele D, Covey DF, Stefan E, Marks DS, Reiter JF, Dror RO, Evers AS, Mukhopadhyay S, Manglik A. Hoppe N, et al. Among authors: marks ds. Nat Struct Mol Biol. 2024 Apr;31(4):667-677. doi: 10.1038/s41594-024-01223-8. Epub 2024 Feb 7. Nat Struct Mol Biol. 2024. PMID: 38326651
Protein design using structure-based residue preferences.
Ding D, Shaw AY, Sinai S, Rollins N, Prywes N, Savage DF, Laub MT, Marks DS. Ding D, et al. Among authors: marks ds. Nat Commun. 2024 Feb 22;15(1):1639. doi: 10.1038/s41467-024-45621-4. Nat Commun. 2024. PMID: 38388493 Free PMC article.
161 results